Wytamma @wytamma
Enjoying the little things like antibodies, ion channels and pip installs. #phylodynamics #parasites #pathogens #turtles #webdev #python wytamma.com Melbourne Joined January 2014-
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My small contribution to this work was to make a new tool for visualising the genetic distances between different SARS-CoV-2 lineages. In the world of recombinants, a tree isn't always the best way to present these. lineage-networks.genomium.org attempts to provide a solution. 🧵
My small contribution to this work was to make a new tool for visualising the genetic distances between different SARS-CoV-2 lineages. In the world of recombinants, a tree isn't always the best way to present these. lineage-networks.genomium.org attempts to provide a solution. 🧵 https://t.co/wIniKe5olD
Hey @PLOSCompBiol I think you've confused LIMS with LLMs
Running a Bayesian phylogenetic analysis on my iPad using free GPU resources from @GoogleColab. Monitoring the MCMC in real-time with Beastiary 🎉 #Bioinformatics
Running a Bayesian phylogenetic analysis on my iPad using free GPU resources from @GoogleColab. Monitoring the MCMC in real-time with Beastiary 🎉 #Bioinformatics https://t.co/Td7Nfzy3Fy
Our client side webapp for root-to-tip regression Clockor2 (clockor2.github.io) is now publish in Systematic Biology! Check out the paper here -> doi.org/10.1093/sysbio… Amazing to see it reach this point after Leo told me the idea in a pub over a year ago!
Our client side webapp for root-to-tip regression Clockor2 (clockor2.github.io) is now publish in Systematic Biology! Check out the paper here -> doi.org/10.1093/sysbio… Amazing to see it reach this point after Leo told me the idea in a pub over a year ago!
It’s the little things.
Hi @GISAID, why is my account blocked from uploading sequences? I remain unable to upload on behalf of @NDMOxford. Why do you not reply to my emails? This is hardly "transparent and equitable data sharing"
This paper sets the new standard for idiosyncratic punk posterior intervals: 30π%
This paper sets the new standard for idiosyncratic punk posterior intervals: 30π% https://t.co/aTYLt3Wp4x
What about --yeah-nah?
Job opening for Genomics Facility Manager, running the sequencing at the Central Clinical School, Monash, located at the Alfred. careers.pageuppeople.com/513/cw/en/job/…
Use snk (snk.wytamma.com) to install Snakemake workflows as CLIs. Config params are automatically converted to CLI flags. $ pip install snk $ snk install wytamma/snakemake-config-test $ snakemake-config-test run --foo
Use snk (snk.wytamma.com) to install Snakemake workflows as CLIs. Config params are automatically converted to CLI flags. $ pip install snk $ snk install wytamma/snakemake-config-test $ snakemake-config-test run --foo https://t.co/TKjAQUJYgR
It's not a deep sea dweller. This is actually the endoplasmic reticulum of a cell, segmented and tracked through time.
WHO added JN.1 to their VOI list on the 20/12/2023 github.com/AusTrakka/VOC-…
This is the best video to introduce a computational biology course. There will never be a better one
PhD and MD/PhD
Our new paper on modeling bacterial nucleoids is online at Current Research in Structural Biology -- take a look! sciencedirect.com/science/articl… with @grinche
If the situation with XBB mirrors what occurred with JN.1 then someone is already chronically infected with the XBB virus that give rise to the lineage that will dominate in late 2024
If the situation with XBB mirrors what occurred with JN.1 then someone is already chronically infected with the XBB virus that give rise to the lineage that will dominate in late 2024
Norelle Sherry @norelle_sherry
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Dr. Kate Quigley @la__cientifica
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804 Followers 478 Following Associate Professor, HKU School of Public Health | HKU-Pasteur | https://t.co/nsjcj9M2Np
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647 Followers 605 Following Phylogenetic community ecologist fascinated by viruses to big cats (and all life in between)
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764 Followers 925 Following Assoc Prof, Director Centre Tropical Bioinformatics, NHMRC ELII Fellow, Genomics, Linux, Precision Medicine, HPC, @JCU, @GarvanInstitute, @CTBMB_JCU 🇦🇺🇨🇦
ELIAS @Amankona_
576 Followers 2K Following | MUSIC | Curiosity | MolBio | Biotech | Microbiology | Vector Biology | @iSTEMhubs
Irish Decree @DecreeIris47583
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𝙱𝙰𝚂𝙰𝙽�.. @basantakhakurel
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David Bacsik @dbacsik
343 Followers 716 Following Genomic tools to understand pathogens MD/PhD Student Bloom Lab @ Fred Hutch | University of Washington SOM
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Jia Liu @JiaLiu38931067
24 Followers 93 Following PhD student at Iowa State University, Bioinformatics and Computational Biology, minor in Statistics
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Nils Homer @nilshomer
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685 Followers 391 Following Policy @TurningPointAU and @MonashAddiction👨💻 Chair @DarbonInstitute 👶 Fencing coach 🤺 Reptile immunology 🐢
Max Cummins @maxcummins1
173 Followers 331 Following Post Doctoral Research Fellow at UTS, studying microbial genomics, antimicrobial resistance, phylogenomics and more fun stuff! https://t.co/7dniNV8n2z
Graeme Dor 🇿🇦 @graemedor
87 Followers 390 Following PhD fellow at the Centre for Epidemic Response and Innovation @ceri_news | MSc in GIS & Remote Sensing | Data Scientist & GIS Specialist
Hazel @hazel_cooper_
186 Followers 3K Following
trung_tv.media-cuisin.. @trung_tv_media
18 Followers 158 Following Food channel, rustic picnic countryside dishes, and humorous edits. - Everyone please support me -
therdysee @therdysee96204
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Gunalan @GunalanD95
222 Followers 373 Following SWE @Barracuda | Python | Problem Solver | DSA | Backend | Anime | Dogs ❤
George Taiaroa @georgetaiaroa
332 Followers 232 Following Personal account/views. Research Fellow in Infectious Diseases @unimelb @thedohertyinst
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Nikita Trojanskis @nikitatr1
10K Followers 2K Following PhD at Uni of Oxford | ML for Healthcare | Deep Learning 👾 | SARS-CoV-2 epidemiology 🦠| Paul Thomas Anderson & Kore-eda 📽️
itnbi00zzfh @ajolj01biz
38 Followers 825 Following Tiktokshop conducts recruitment for part-time partners! Salary $100-$300 per day, please contact us https://t.co/7WPCcMaruC
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113 Followers 143 Following Senior lecturer in data science, University of Melbourne. & Associate professor in machine learning, MBZUAI.
Anna Syme @annasyme
663 Followers 2K Following General rambling. I like ants, science and funny stuff. Work info at https://t.co/zXC8QZFIzS 🏳️🌈🏳️🌈🏳️🌈
Jessica Fenker (she/h.. @jehzim
675 Followers 682 Following 💼 @melbournemuseum - opinions on my own👩🏻🔬 affiliated with @EcoEvo_ANU 🐍member of @hergirls Evolutionary biologist & activist for diversity in Science🇧🇷
Thanh Le Viet @thanhleviet
539 Followers 3K Following Bioinformatician in Core Bioinformatics and Informatics group, at Quadram Institute Bioscience. Working on bioinformatics infrastructures. Tweets my own.
Dave McNally @OliasDave
1K Followers 327 Following Self employed computer programmer, data nerd & problem solver. Interested in pubs, real ale, chocolate and statistics.
Arie Ardiansyah N @rie_ardian
229 Followers 348 Following Science | Chelsea FC | Travelling | Reading | Isi tweet adalah pendapat pribadi
Arshan Nasir, PhD @NasirArshan
197 Followers 608 Following Scientist @Moderna_TX. Molecular evolution, pathogen genomics, and mRNA vaccines. Previously, Staff Scientist at @LosAlamosNatLab. Views my own.
vch @vch
92 Followers 4K Following
Christa S @FrauDoktor2000
126 Followers 1K Following If you don't take a temperature, you can't find a fever. „Science is the poetry of reality.“ (Richard Dawkins)
Outbreak Updates @outbreakupdates
14K Followers 4K Following Infectious diseases and Pathogens. Latest reports. DM me about interesting stories.
David Peck @overseasdem
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Diego Bassani, PhD @DGBassani
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Federico Gueli 🏳�.. @siamosolocani
5K Followers 3K Following Quanto era bella la pace Brotherdog = a will of peace while seeking variants RT =not endorsment! If i must die, you must live to tell my story (Refat Alareer)
GEORGE OFORI @GEORGEO56330642
52 Followers 140 Following Msc Data Science, Germany 🇩🇪 | MBA, Ghana 🇬🇭 | Bsc Accounting, Ghana 🇬🇭 | Resesrch Assistant |Teaching Assistant| Financial Data Analyst |
Adrianna Turner @adriannamturner
207 Followers 301 Following Researcher | Doherty Institute | Howden lab | AMR, genomics and molecular micro. Views my own. 🦠🧬
Rafa Lopes @rafalpx
6K Followers 3K Following Models for nowcasting and epidynamics, Postdoc at @NathanGrubaugh lab, PhD at IFT @obscovid19br member Opinions are my own. VIVA O SUS!
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Prof Jan Strugnell @JanStrugnell
2K Followers 2K Following Geneticist - Director of the Centre for Sustainable Tropical Fisheries & Aquaculture @jcu @CSTFA_JCU @MarineOmics also @janstrugnell.bsky.social
Tuyet Hoang @hktuyet
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ARC Tracker @ARC_Tracker
16K Followers 1 Following Part human, part bot, 100% UNOFFICIAL. I track Australian Research Council grant outcomes. Bot checks for announcements of outcomes each minute. FAQ in profile.
Professor Jodie Rumme.. @physiologyfish
6K Followers 3K Following #biodiversity #coralreefs #fish #sharks stress #physiology #evolution #conservation #climatechange #physioshark #womeninscience #TEDx speaker #LGBTQ #STEM
Danielle Wallace @that_frog_gorl
1K Followers 1K Following PhD candidate @unimelb @OneHealthRes | Wildlife ecologist 🌱 Will always talk #frogs 🐸 #chytrid #breeding #conservation (she/her)
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Jodi Rowley @jodirowley
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CDGN @CDGN_Australia
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441 Followers 628 Following Speciation & Conservation Genomics, Species Distribution modelling. PhD candidate & Research Assistant at the Adaptation Lab @JCU
Louise Judd @JuddLmj
309 Followers 247 Following Wet lab researcher in a computational biology group, bacterial genomics. Senior scientist @DohertyGenomics
WDA - Wildlife Diseas.. @WildlifeDisease
3K Followers 345 Following WDA | Promote healthy wildlife and ecosystems, biodiversity conservation, and environmentally sustainable solutions to One Health challenges
Alejandro de la Fuent.. @Afuentepinero
385 Followers 753 Following PhD candidate seeking to understand how tropical montane ecosystems respond to climate change.
Doherty Institute @TheDohertyInst
25K Followers 1K Following The Peter Doherty Institute for Infection and Immunity at @UniMelbMDHS @theRMH. Research includes #HIV, #hepatitis, #malaria, #influenza #COVID19 & more.
Bloom Lab @jbloom_lab
48K Followers 1K Following Lab studying molecular evolution of proteins and viruses. Affiliated with @fredhutch @HHMINEWS @uwgenome. @jbloomlab@bsky
Claire Gorrie @ClaireGorrie
813 Followers 530 Following Postdoc with MDU @dohertygenomics @unimelb #bacteria #genomics #bioinformatics transmission, hospitals, AMR. Views my own. She/her.
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36 Followers 117 Following Clinical Microbiologist, lecturer & analytics student in Tasmania. Interested in genomics, data science & universal health coverage. Dance enthusiast. 🐰 🦠💃
Fred Jaya @phylofred
439 Followers 507 Following Research Software Developer @EcoEvo_ANU @ANUPopHealth ❤️: phylogenetics and vim
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63 Followers 605 Following
Kevin Bonham 🚽🦠.. @Kevbonham
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Heather Neilly @HeatherNeilly
630 Followers 505 Following 2021 ESA Wiley Next Gen Ecologist. Ecological restoration, Australian Landscape Trust @calperum station. Adjunct University of Adelaide. Thoughts my own
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V @vsoch
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Ming "Tommy" Tang @tangming2005
30K Followers 2K Following Director of computational biology. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Alexei Drummond @alexeidrummond
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Ragnar Groot Koerkamp @curious_coding
566 Followers 59 Following PhD on pairwise alignment & bioinf datastructures @ ETH Zurich IMO, ICPC, Xoogler, Rust, road-cycling, hiking, wild camping, photography
Workshops @evomics
4K Followers 343 Following Our objective is to provide training in the fields of genomics, population genetics and phylogenomics.
Jonathan Meddings @J_Meddings
685 Followers 391 Following Policy @TurningPointAU and @MonashAddiction👨💻 Chair @DarbonInstitute 👶 Fencing coach 🤺 Reptile immunology 🐢
Rob J Hyndman @robjhy.. @robjhyndman
15K Followers 990 Following Professor of Statistics, Monash University, Australia. Now @[email protected]. Interested in #forecasting, #rstats, #statistics. he/him
PlaguesRUS @ThePlaguesRUS
2K Followers 4K Following We are a plague on the Earth. - Sir David Attenborough.
𝕐 (@[email protected].. @nomad421
8K Followers 939 Following Associate Professor of CS @ University of Maryland. Proud Rust advocate! I ♥ science & compiled, statically-typed programming languages! Views are my own.
Max Cummins @maxcummins1
173 Followers 331 Following Post Doctoral Research Fellow at UTS, studying microbial genomics, antimicrobial resistance, phylogenomics and more fun stuff! https://t.co/7dniNV8n2z
Valeriy M., PhD, MBA,.. @predict_addict
17K Followers 3K Following PhD in machine learning | conformal prediction | time-series | author of bestselling Practical Guide to Applied Conformal-Prediction https://t.co/ugR9TtXd29
George Taiaroa @georgetaiaroa
332 Followers 232 Following Personal account/views. Research Fellow in Infectious Diseases @unimelb @thedohertyinst
RECOMB Conference Ser.. @RECOMBconf
1K Followers 248 Following The 28th International Conference on Research in Computational Molecular Biology. April 29 - May 2, 2024
Verity Hill @viralverity
1K Followers 725 Following Postdoc with @NathanGrubaugh @YaleSPH Phylodynamics and genomic epi of arboviruses (esp dengue) https://t.co/Ue0kTeN4v2 She/her
Virological Posts @virological_org
5K Followers 0 Following A bot tweeting new posts from the https://t.co/Na52gjaiN2 discussion forum for molecular evolution and epidemiology of viruses. Maintained by @noamross
Adrianna Turner @adriannamturner
207 Followers 301 Following Researcher | Doherty Institute | Howden lab | AMR, genomics and molecular micro. Views my own. 🦠🧬
Dan Knight @DanRJKnight
2K Followers 2K Following Senior Bioinformatician at WA Health https://t.co/uvEyPGOfKe
George Bouras @GB13Faithless
642 Followers 901 Following Bioinformatics @UniofAdelaide - phages, microbes and more
Richard Neher @richardneher
14K Followers 570 Following i am a biologist/physicist at the @biozentrum in Basel trying to understand how microbes evolve. I am rarely here -- find me at: @[email protected]
Sebastian Raschka @rasbt
267K Followers 906 Following Machine learning & AI researcher writing at https://t.co/A0tXWzG1p5. LLM research engineer @LightningAI. Previously stats professor at UW-Madison.
Paul Harrison @pfh@ma.. @paulfharrison
714 Followers 238 Following Bioinformatician with the Monash Bioinformatics Platform. I aim to control my false statement rate.
Rhys White 🧬 @RhysTWhite
1K Followers 312 Following Scientist at @ESRNewZealand, using #genomics to understand #evolution, diversity, & pathogenesis. Welsh expat living in New Zealand. Formerly @UQ_News
Ben Vezina @bananabenana
380 Followers 372 Following compu microbio + microbio + molbio postdoc. can we pls fix greenhouse emissions, gov, pls
karin verspoor (profe.. @karinv
3K Followers 2K Following Executive Dean @RMITComputing; AI in medicine #AAAiH; text mining, bioinformatics, #DigitalHealth #NLProc #techdiversity #TeamHB3 pronouns: she/her
Dr María del Mar Qui.. @_marstudio
564 Followers 957 Following Data analyst, mathematician, neuroscientist, #SuperstarsOfSTEM 21-22. Loves learning, knowledge sharing, evidence-based decisions, crafting, and acrobatics.
JeannieMariePaterson @JMPaters
955 Followers 503 Following Professor of Law, specialising in consumer protection, consumer credit and safe, fair and reliable AI.
Matthew McKay @Matthew_R_McKay
156 Followers 337 Following ARC Future Fellow and Prof, @UniMelb, @engunimelb, @TheDohertyInst. Computational biology, virus evolution, vaccine design, T cells
Mingming Gong @MingmingGong1
113 Followers 143 Following Senior lecturer in data science, University of Melbourne. & Associate professor in machine learning, MBZUAI.
Tulio de Oliveira @Tuliodna
61K Followers 654 Following Director of CERI (Centre for Epidemic Response & innovation) @StellenboschUni and KRISP (KZN Research Innovation & Sequencing Platform) @UKZN. Tweets my own.
Chantel Lin @LinChantel_
176 Followers 172 Following Program Manager at @TheDohertyInst. Antimicrobial Resistance, Genomics, Public Health.
Gerry Tonkin-Hill @gerrythill
605 Followers 475 Following Group leader @PeterMacCC and @TheDohertyInst microbial genomics, statistics, machine learning
Peter Daszak @PeterDaszak
32K Followers 549 Following @EcoHealthNYC President. @theNASEM Forum on #microbialthreats Chair. Zoologist. Parasitologist. Ecologist. British. American. Ukrainian. 🇬🇧🇺🇦🇺🇸
Javier Fernandez @JaviF_86
759 Followers 4K Following 🧬🦠 AMR/Microbial Genomics/Bioinformatics. Tracking AMR bacteria from a One-Health perspective. Passionate ➡️ phylogenomics, plasmids and phages. 🇦🇷 in 🇨🇭
Louise Moncla @LouiseHMoncla
2K Followers 297 Following Assistant Professor of Pathobiology @pennvet using trees to study RNA virus evolution and transmission. viruses, sequencing, phylogenetics, pop gen. She/her
Stefano Giulieri @stefanoinoz
305 Followers 213 Following Infectious diseases physician🇨🇭🇦🇺, clinician-researcher, bone & joint infections, Staphylococcus aureus, bacterial genomics
TDM (e/λ) @cto_junior
10K Followers 610 Following L-12 in ZIRP | Larry Ellison's bloodboy | One-man soonicorn | Softbank & FIITJEEs love child Google doc notes ⬇️
@dfocosi @yunlong_cao @RajlabN @SystemsVirology @BenjMurrell @SimonLoriereLab @EricTopol @TRyanGregory @LongDesertTrain @SolidEvidence @CorneliusRoemer @siamosolocani Have you considered using mermaid to create this figure? Code here:mermaid.live/edit#pako:eNp1…
Data analysis retreat 2.0 is under way! Students are spending the weekend at UNE Smart Farm Field Lab analysing data from this year’s experiments #datacamp #r #superlab @deborah_bower @Remo_Bosco @MaxTibby
Me to students: Always carefully document all of your code and files. Annotate everything Me writing my own code: I'm sure I'll remember this in the future. Current me: Past me was a freaking idiot. What is going on here?
How is this even possible? This is obviously written by AI. How is it possible that none of the authors AND reviewers missed this? 😲
My small contribution to this work was to make a new tool for visualising the genetic distances between different SARS-CoV-2 lineages. In the world of recombinants, a tree isn't always the best way to present these. lineage-networks.genomium.org attempts to provide a solution. 🧵
🚨Out today @TheLancet from @TheCrick @UCLHresearch Legacy study thelancet.com/journals/lance… Two different COVID-19 mRNA vaccines were deployed for 5th dose boosters in the UK #JCVI We tested if either 💉 generated neutralizing antibodies against BA.2.86 & JN.1 A short🧵 👇
My career as a hand model really is picking up steam
Coming Soon! ⏰ TWiEVO Livestream 3/10/24 6pm EST. This special episode will be recorded at The Science Mill in Texas. Our guests will be Jeehyn Park from the Science Mill & Rich Condit from TWiV. The theme is “Building Spaces that Celebrate Science.” 📺 bit.ly/3VfFONR
In this study we have analyzed almost 300k SARS-CoV-2 genomes, most of them generated by COVIGEN network which played a central role in strengthening genomic surveillance in Latin America and the Caribbean region. We then inferred the diffusion patterns of Gamma, Lambda and Mu.
Dispersion patterns of #SARSCoV2 variants Gamma, Lambda and Mu in Latin America and the Caribbean @GrafTiago @Juliana_Leite_ nature.com/articles/s4146…
This was @duckdb meetup in Dublin 🇮🇪! Next up: Paris, 13 March 🇫🇷 with @backmarket hosting. Secure your spot now! Plus, don't miss the #duckdb 101 workshop by @mehd_io before the event. 🗣️ Meetup: eventbrite.com/e/data-meetup-… 👨💻Workshop: eventbrite.com/e/duckdb-works…
@wagslane You say there's not a limit but you've made it quite clear that you do have a limit that is "responsible". That clearly implies that going over 20 days is irresponsible. You say it's unlimited but in practice it's very far from that.
🚨 Clockor2 is now out in Systematic Biology! 🚨 We have added some helpful new features including dark mode and better download options A massive thank you to my collaborators Andrew Rambaut, @sebduchene, and @wytamma! @systbiol (1/4)
🚨 Want to fit a molecular clock, or 2? 🚨 👉 Try clockor2.github.io - a client side tool for fitting global and local clocks with root-to-tip regression. Developed in collaboration with @wytamma, @arambaut, and @sebduchene (rb.gy/dro6j)
heard UMAP was popular on twitter, anyone have any advice on how to tighten up the clusters?
A field ecology job available at Calperum Station in SA. Come and make a difference working on landscape-scale restoration projects in the beautiful Murray mallee!
Really impressed by reviewing for @JOSS_TheOJ for the first time - having a conversation with the author/developer, in the open, feels so much more productive than a standard review process.
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