Sergei Pond @sergeilkp
Dad. Husband. Born/raised Kyiv. Developer of @hyphy_software. Former mathematician, current professor of biology at Temple U. Google scholar: https://t.co/qyzpbkE1qZ lab.hyphy.org Gladwyne, PA Joined January 2017-
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AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
You can now run @hyphy_software entirely in your browser thanks to @emscripten, @observablehq and biowasm (@RobAboukhalil). Simple example in observablehq.com/@spond/hyphy-b…
I like the revised NIH review criteria (nature.com/articles/d4158…). Now please revise grant budget caps to reflect the reality that 250K in 2023 is worth ~50% compared to the 1990s (usinflationcalculator.com)
This seems highly apropos w.r.t to the posts in my feed regarding the revised Bayes Factors in science.org/doi/10.1126/sc…
This seems highly apropos w.r.t to the posts in my feed regarding the revised Bayes Factors in science.org/doi/10.1126/sc…
Great study. Clever genomic forensics. Molnuipravir: playing generic roulette.
Great study. Clever genomic forensics. Molnuipravir: playing generic roulette.
📄 📄 Our molnupiravir work is now out after peer-review! We definitively demonstrate that molnupiravir has resulted in viable SARS-CoV-2 viruses with significant numbers of mutations, in some cases with onwards transmission of mutated viruses. nature.com/articles/s4158…
Fascinating work on "generic" antigen design nature.com/articles/s4155… Great to see my former post-doc advisor @sdwfrost continuing to contribute to innovative projects.
4 days left to apply for the 2023 JXTX + CSHL Genome Informatics Scholarship. Apply today at jxtxfoundation.org/news/2023-04-0…
Take your time to read this. Very clearly written, very compelling. Points to the fundamental issues with "opaque" big-data approaches in 'omics. What the preprint shows is what peer review **should** have caught, but there is no incentive or reason for reviewers to replicate.
Take your time to read this. Very clearly written, very compelling. Points to the fundamental issues with "opaque" big-data approaches in 'omics. What the preprint shows is what peer review **should** have caught, but there is no incentive or reason for reviewers to replicate.
Chairing an NIH study section is boss fight level of peer review. I now have a lot more appreciation for all the chairs of all my previous study sections.
Psst...here are some handy tools you may not know about that can help you with NIH grant submissions (1/5)
1. If your eyes follow the movement of the rotating pink dot, you will only see one color, pink. 2. Green Catastrophe: If you stare at the black + in the center, the moving dot turns to green. 3. Reality Shatter: Now, concentrate on the black + in the center of the picture.…
Very proud of @aglucaci who yesterday "officially" became the first @cst_temple Bioinformatics Program PhD graduate. When I graduated in 2003, I only had 2 papers; he has 12! He sets a high standard for others to follow and is moving on to @mason_lab, where he will surely excel.
A nice overview of the recent @GISAID / raccoon dog data sharing debate nature.com/articles/d4158… I agree with this sentiment re: GISAID rules. This is separate from the merit/lack of merit discussion regarding the "raccoon dog" report.
Ziv and Lempel co-invented the famous Lempel-Ziv algorithm that is the basis of ZIP files. Prof. Abraham Lempel died 7 weeks ago. Prof. Jacob Ziv died today 😔 RIP. We are losing the giants that shaped computing as we know it.
Bloom Lab @jbloom_lab
48K Followers 1K Following Lab studying molecular evolution of proteins and viruses. Affiliated with @fredhutch @HHMINEWS @uwgenome. @jbloomlab@bskyTom Peacock @PeacockFlu
51K Followers 1K Following Virologist. Viruses, Influenza, Coronaviruses and SARS-CoV-2. Typos are intenitonal. Fellow at @Pirbright_Inst and @ImperialInfectDr Emma Hodcroft @firefoxx66
80K Followers 824 Following Die Virenjägerin! 🏹🧬 Co-developer of @nextstrain! Using phylogenetics, I study viruses. I like ✈️ & 🐈 @[email protected] @firefoxx66.bsky.socialTulio de Oliveira @Tuliodna
61K Followers 654 Following Director of CERI (Centre for Epidemic Response & innovation) @StellenboschUni and KRISP (KZN Research Innovation & Sequencing Platform) @UKZN. Tweets my own.Ryan Hisner @LongDesertTrain
22K Followers 838 Following Teacher "Be ruthless with systems and be kind to people." Michael Brooks, 1983-2020Edward Nirenberg 🇺.. @ENirenberg
36K Followers 6K Following Views my own, but you can borrow them if you feel so inclined. Anti-disease. Big Nerd Energy. “A homework person.” Fun at parties. Antibody hoarder. he/himAlina Chan @Ayjchan
72K Followers 563 Following Scientific Advisor at Broad Institute of MIT & Harvard 🧬 Co-author of VIRAL: the search for the origin of Covid-19 📖 A dangerous young investigator 🕵🏻♀Duncan MacCannell @dmaccannell
6K Followers 898 Following Molecular epi and public health. Pathogen genomics, clin micro, AMR, (bio)tech and open data. Personal account. Opinions/dad jokes are my own. 🔬🦠🧬😷💉🌻🦣🍩Louis R Nemzer @BiophysicsFL
4K Followers 3K Following Professor at Nova Southeastern University. Antibiotic Resistance, Agent-Based Models, Seizure Prediction, Information Entropy of DNAGilles Demaneuf @gdemaneuf
7K Followers 1K Following Pointy Head. Opinions, analyses and views expressed are purely mine and should not in any way be characterised as representing any institution or company.The Sato Lab (Kei Sat.. @SystemsVirology
20K Followers 2K Following 東京大学医科学研究所システムウイルス学分野教授 The Genotype to Phenotype Japan (G2P-Japan) Consortium主宰 一般社団法人G2P-Japan代表理事 週プレNEWSでコラム連載中→https://t.co/zLvSNcurTqDr CJ Houldcroft 🕷.. @DrCJ_Houldcroft
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5K Followers 3K Following Quanto era bella la pace Brotherdog = a will of peace while seeking variants RT =not endorsment! If i must die, you must live to tell my story (Refat Alareer)Raj Rajnarayanan @RajlabN
17K Followers 702 Following Assistant Dean of Research and Associate Professor, NYITCOM at Arkansas State University | My Tweets are my ownKevin McKernan @Kevin_McKernan
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25K Followers 5K Following He, him. CMV virologist exploring how viruses exploit glycoimmune checkpoints #Glycotime | Loves 🥾 🏔️ 🏕️| Y'all on Bluesky or Threads? Linktree below ⬇️Prof Francois Balloux @BallouxFrancois
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5K Followers 760 Following Truth and time have a funny way of catching up with each other. YouTube channel: https://t.co/KpmIIwJI4oHouriiyah Tegally, Ph.. @houzhou
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44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/himBayan Shoultz @BayanShoult
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40 Followers 5K FollowingTabitha Godfrey @GodfrTabith
72 Followers 5K FollowingJustus W. Bolsen @JustusBolsen
231 Followers 5K Following Justus an Alex! Kommen! Man findet mich in Berlin. Ich bin Programmierer. Für die Menschen der #Ukraine! Kundschafter! Beobachter! Explorator!Franzi @Franzi325
0 Followers 2K FollowingEric Topol @EricTopol
694K Followers 589 Following physician-scientist, author, editor. Ground Truths: https://t.co/YhatcBT0hABloom Lab @jbloom_lab
48K Followers 1K Following Lab studying molecular evolution of proteins and viruses. Affiliated with @fredhutch @HHMINEWS @uwgenome. @jbloomlab@bskyT. Ryan Gregory @TRyanGregory
83K Followers 1K Following Professor of evolutionary biology. I would like there to be less death, pestilence, war, and famine. Assume sarcasm. No one could have foreseen this. He/him.Tom Peacock @PeacockFlu
51K Followers 1K Following Virologist. Viruses, Influenza, Coronaviruses and SARS-CoV-2. Typos are intenitonal. Fellow at @Pirbright_Inst and @ImperialInfectDr Emma Hodcroft @firefoxx66
80K Followers 824 Following Die Virenjägerin! 🏹🧬 Co-developer of @nextstrain! Using phylogenetics, I study viruses. I like ✈️ & 🐈 @[email protected] @firefoxx66.bsky.socialTulio de Oliveira @Tuliodna
61K Followers 654 Following Director of CERI (Centre for Epidemic Response & innovation) @StellenboschUni and KRISP (KZN Research Innovation & Sequencing Platform) @UKZN. Tweets my own.Ryan Hisner @LongDesertTrain
22K Followers 838 Following Teacher "Be ruthless with systems and be kind to people." Michael Brooks, 1983-2020Florian Krammer @florian_krammer
338K Followers 1K Following Viruses, viruses, viruses and vaccines. V5=3xancestral+1x bivalent+1xXBB Professor at the Department of Microbiology Icahn School of Medicine at Mount SinaiTheo Sanderson @theosanderson
14K Followers 1K Following Scientific researcher in pathogen genetics. Previously: @GoogleAI, @sangerinstitute 🧪 🤖 🖥️ @[email protected] / @theo.io on blueskyMarc Johnson @SolidEvidence
31K Followers 131 Following Molecular virologist, Professor, sewage sage and wastewater wizard.Alina Chan @Ayjchan
72K Followers 563 Following Scientific Advisor at Broad Institute of MIT & Harvard 🧬 Co-author of VIRAL: the search for the origin of Covid-19 📖 A dangerous young investigator 🕵🏻♀Richard H. Ebright @R_H_Ebright
70K Followers 282 Following Board of Governors Professor of Chemistry and Chemical Biology @RutgersU @BiosafetyNowLouis R Nemzer @BiophysicsFL
4K Followers 3K Following Professor at Nova Southeastern University. Antibiotic Resistance, Agent-Based Models, Seizure Prediction, Information Entropy of DNAGilles Demaneuf @gdemaneuf
7K Followers 1K Following Pointy Head. Opinions, analyses and views expressed are purely mine and should not in any way be characterised as representing any institution or company.Alex Washburne @WashburneAlex
30K Followers 3K Following Deaf guy, great listener! Princeton PhD Math/Stats/Bio/Finance Opinions my own 👌🤓Federico Gueli 🏳�.. @siamosolocani
5K Followers 3K Following Quanto era bella la pace Brotherdog = a will of peace while seeking variants RT =not endorsment! If i must die, you must live to tell my story (Refat Alareer)Kevin McKernan @Kevin_McKernan
81K Followers 3K Following Cannabis Genome Project,2011. Developed the SOLiD sequencer. R&D lead Human Genome Project at MIT/WIBR. Founder- Medicinal GenomicsJeremy Kamil is also .. @macroliter
25K Followers 5K Following He, him. CMV virologist exploring how viruses exploit glycoimmune checkpoints #Glycotime | Loves 🥾 🏔️ 🏕️| Y'all on Bluesky or Threads? Linktree below ⬇️Matthew Hahn @3rdreviewer
12K Followers 571 Following Population geneticist. Hobbies include: two kids.Prof Francois Balloux @BallouxFrancois
148K Followers 1K Following Director @UGI_at_UCL. Interest in Infectious disease epidemiology, pathogen genomics and global healthULA @ulalaunch
367K Followers 1K Following The nation’s most experienced, reliable and accurate launch service provider.Joel Wertheim @JoelWertheim
6 Followers 0 FollowingMarc Andreessen 🇺�.. @pmarca
1.4M Followers 24K Following Techno-optimist. E/acc. Technology brother. Move Fast and Make Things. p(Doom) = 0; p(“1984”) = not 0.Calley Means @calleymeans
76K Followers 2K Following 💪Co-Founder, @TrueMedPayments (HSA spending on metabolically healthy items)📕✨Pre-Order Good Energy - my book with @caseymeansmd - at link belowPhil Magness @PhilWMagness
31K Followers 2K Following Economic & political historian. @independentinst. I do data analysis about the past & present. Opinions are my own. RT =/= endorse.Nate Silver @NateSilver538
3.4M Followers 2K Following New Book, On The Edge, August 13: https://t.co/WeCLEOd4BeEd Conway @EdConwaySky
196K Followers 1K Following Currently promoting MATERIAL WORLD. This entails tweeting about it a LOT. I’ll stop once you’ve all bought it.Riley Gaines @Riley_Gaines_
1.0M Followers 459 Following University of Kentucky swim '22 😼 Host of Outkick's Gaines for Girls podcast🎙️ Director of the Riley Gaines Center⛹🏻♀️ Get my new book at link in profile📖Geoffrey Miller @primalpoly
140K Followers 7K Following Psych professor; wrote The Mating Mind, Spent, Mate, Virtue Signaling. Themes: Evolution, sentience, civilization, EA, X risk, crypto. Wife: @sentientist. ⏸️Eli Steele @Hebro_Steele
27K Followers 369 Following Filmmaker. American. Principles cannot be canceled. Substack: https://t.co/zURrTUrmAz & https://t.co/8wLzgRDGOy https://t.co/NQkInYewt9ShorterLab @ShorterLab
11K Followers 6K Following Countering deleterious phase transitions in ALS/FTD, PD, AD, and related disorders @Penn @PennMedicine @bb_upenn @BMBGGUPENN @PGGUPenn @PennNGG @CAMBUpennCST Temple @CST_TempleU
1K Followers 422 Following All the news and science you could ever need from Temple University's College of Science and Technology.Joe Felsenstein @JFelsenstein
729 Followers 1 FollowingRobert Aboukhalil @RobAboukhalil
2K Followers 308 Following Creator of https://t.co/312rJKliGl, https://t.co/JZm4DkvQAu, https://t.co/6j4AXXF0Br. Co-host of OMGenomics Podcast: https://t.co/m5LwsD40Pu.Yoni Freedhoff🎗️ @YoniFreedhoff
68K Followers 16K Following Associate Professor Family Medicine/Dad/Not Your Good Jew/עם ישראל חיDavid Decosimo @DavidDecosimo
11K Followers 297 Following Philosopher at Boston University, Past-chair of #AcademicFreedom @BU_Tweets, PhD @Princeton. Ethics, religion, & politics. RT≠endorse; opinions ownJohn Sailer @JohnDSailer
11K Followers 866 Following Senior Fellow at @NASorg | Investigating higher education | Words in @WSJ, @theFP, @tabletmag, @unherdStopAntisemitism @StopAntisemites
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539K Followers 41 Following Senior Fellow @HooverInst. Classics and military history. Opinions are my own.Stephen Goldstein @stgoldst
8K Followers 2K Following Evolutionary virology postdoc @ Univ of Utah. Previously Penn Medicine. Coronaviruses and the Wasatch.Gavin Sherlock @gsherloc
4K Followers 469 Following Geneticist whose lab does experimental evolution, using yeast as a model. Because being a footballer was never going to work out, due to lack of talent.Bryce Nickels @Bryce_Nickels
6K Followers 164 Following Professor of Genetics, Rutgers University; co-founder of @BiosafetyNow; #RetractProximalOrigins; #TeamTruthIsraeli Air Force @IAFsite
329K Followers 56 Following The Israeli Air Force’s Official Twitter Account: exclusive, live updates and real-time information about the IAFMarc Niebel @MarcNiebel
389 Followers 455 Following Clinical Scientist,Bioinformatician and sometimes triathlete. Opinions are my own. @[email protected]Josette Schoenmakers @JosetteSchoenma
7K Followers 402 FollowingSan Emmanuel James, P.. @JSAN4CHRIST
639 Followers 1K Following Systems Analyst and Programmer, Bioinformatician, Data Scientist, Viral and Bacterial Research, Training and Capacity Building in AfricaPhillip J. Buckhaults.. @P_J_Buckhaults
18K Followers 3K Following Scientist & USC Professor of Molecular Biology & Genetics. Using genomics to read the past & change the future.Muriel Blaive, PhD @MurielBlaivePhD
10K Followers 732 Following Historian of Czechia. Inveterate enemy of hypocrisy and self-righteousness. Admirer of Stefan Zweig, Hannah Arendt, George Orwell, and Karl Popper.Union Nation @PHLUnionNation
3K Followers 149 Following Enhancing Your Philadelphia #DOOP Fan Experience | @PHLSportsNation Section | Blogs📝 Social Content📲 Giveaways💥Podcasts🎙Shop🛍(https://t.co/gXTQnomatS)World of Statistics @stats_feed
3.8M Followers 535 Following There are three kinds of lies: lies, damned lies, and statistics. Sister page of @engineers_feedRandy Mott @randymot4
28K Followers 937 Following Republican activist, lawyer, environmental businessman, former infantry officer. American in Poland and OrlandoVince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsGregg Thomas @greggwcthomas
514 Followers 746 Following Bioinformatics Scientist at Harvard FAS Informatics. Recent postdoc at UMontana (https://t.co/kPuAyZi2CI). Evolution, Genomics, Phylogenetics. Dog walker. He/him.Jeffrey Good @jeffreymgood
2K Followers 887 Following Evolutionary genomics of mammals. Prof & Director of the UMontana genomics core. He/himReview Commons @ReviewCommons
6K Followers 1K Following A platform by @EMBO and @ASAPbio_ that provides independent peer review before journal submission for Refereed PreprintsYulia Latynina @YLatynina
101K Followers 298 FollowingTU Informatics Studio @tubioinfostudio
97 Followers 381 Following @TempleUniv students, postdocs, faculty, & others who like unique +SOTA techniques in seq- as well as struct-based science. We host ML seminars +workshops #MLOliver Anthony Music @AintGottaDollar
447K Followers 4 FollowingGary R. Whittaker @whittakerIDlab
851 Followers 132 Following Professor, Microbiology & Immunology and Public & Ecosystem Health, College of Vet Med; Section Chief, Infectious Disease Epidemiology MPH Program #firstgenIgor Sushko @igorsushko
311K Followers 1K Following Born in Ukraine. American. @WindofChangeRG Racecar Driver (Ret.) Japanese SUPER GT #FSBletters➡️https://t.co/tICWfox8tEAdam Phillippy @aphillippy
18K Followers 1K Following Goodbye Twitter 👋 You can now find me on bsky. I'll also try and post research updates more frequently on my lab homepage, linked below ⬇️David Zweig @davidzweig
113K Followers 898 Following Author of INVISIBLES. Forthcoming: AN ABUNDANCE OF CAUTION. Subscribe to my newsletter: http://SilentLunch. Also @TheAtlantic @NYMag @Wired @NYTimes @TheFPRichard McElreath �.. @rlmcelreath
46K Followers 2K Following Anthropologist @MPI_EVA_Leipzig - telling anyone who will listen that, if we are very careful and try very hard, we might not completely mislead ourselvesJohan Bruyneel 🇧�.. @JohanBruyneel
117K Followers 534 Following Proud dad of Victoria & Christian. Ex-procyclist. Proud ex-manager of Lance Armstrong, 7 TDF winner. Antihypocrisy warrior. Architect (courtesy of usada)Sebastian Deorowicz @sdeorowicz
338 Followers 35 Following Data compression. Algorithms for genome sequencing compresion and analysis.Awesome shout out by @eenork on using the Galaxy-VGP assembly pipeline for her dog assemblies and research! #agbt #usegalaxy galaxyproject.org/projects/vgp/
Our genome assembly broke @NCBI! We recently submitted the genome of the endangered White Bark Pine, which has 4 scaffolds that are longer than > 2,147,483,647 bp, which is the largest integer for a 32-bit int (2^31 - 1). So we have to break them and re-submit
Falcon 9 successfully launched our 11th and 12th missions of the month from Florida earlier today
Excited to share our latest paper on optimizing genetic distance thresholds for inferring HIV-1 transmission networks. Our heuristic scoring approach adapts to diverse epidemics with an aim of improving identification of clusters & aiding public health interventions.
AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
Very excited to announce "Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment" by @samkovaka et al. biorxiv.org/content/10.110…
Incredibly impressive tour of @TACC - which has served as the primary home to @galaxyproject for more than 10 years! Amazing!
I'm done with @Google. I know many good individuals working there, but as a company they've irrevocably lost my trust. I'm "moving out". Here's why: I've been reading Google's Gemini damage control posts. I think they're simply not telling the truth. For one, their text-only…
Our AI image generation feature got it wrong. Here's more on what happened and how we're working to fix it. blog.google/products/gemin…
This must be the most "Hannah Kim"-way of getting the first first-author paper. I am an academic hybrid with an interdisciplinary background interested in teaching and diversity. Grateful for the support from the community and the mentors 🧶. researchgate.net/publication/37…
Just released a BLAST tutorial on sandbox.bio! Learn to align DNA and protein sequences on the command line: ➡️ sandbox.bio/tutorials/blas… This tutorial was adapted from @shawntoneil's fantastic book.
The most blatantly self-serving article I've seen in recent memory. The reason for loss of public trust in science is… that we don't treat editors with enough respect? Yes, editors should be respected. No, that has nothing to do with loss of trust. 1/2 science.org/doi/10.1126/sc…
tech is great but worth noting that Costco is doing $240b in annual sales and uses this for inventory management
Here is my brief analysis of Dec-28-2019 SARSCoV2 submission to Genbank. This analysis supports my conclusion to WSJ (wsj.com/politics/natio…) that this submission does not tell origin of virus, but does show sequence known to Chinese Academy of Sciences weeks before released
That’s right! AlphaFold is coming to @galaxyproject! Soon anyone anywhere will be able to fold and analyze the structure of nearly any protein completely for free! Many thanks to @thesteinegger et al for working with us to deploy their optimized ColabFold implementation.
- Air Force Academy graduate - majored in Astrophysics - Truman Scholar - Air Force Pilot - founded org f/ cancer research - enrolled Harvard Kenney School of Govt - Miss America by the age of 22. Incroyable.
Very proud to work with Vertebrate Genome Project to support the assembly of all vertebrate species! @galaxyproject @genomeark @giulio_formenti #PAG31
My team has been in contact with the Biden Administration throughout the day to correct this decision. I’m pleased Welcome Park will remain the rightful home of this William Penn statue — right here in the Commonwealth of Pennsylvania Penn founded.
The review of the new design proposal for Welcome Park has been withdrawn. No changes to the William Penn statue are planned. For more info, please visit: nps.gov/inde/learn/new….
The review of the new design proposal for Welcome Park has been withdrawn. No changes to the William Penn statue are planned. For more info, please visit: nps.gov/inde/learn/new….
1/ There's an element of @realchrisrufo's strategy no one has picked up on yet. It's this: Almost nobody outside universities reads academic papers, so the papers radical activist professors write in which they defend absurd ideas don't get read by the general public. So...
@alchemytoday @acritschristoph Any SARS2 reads in samples anywhere from early Dec 2019 or earlier would be informative in my view. But by Jan 2020 when these Huanan market samples were collected, it is known there had been dozens of infected humans at market. See below image from ncbi.nlm.nih.gov/pmc/articles/P…