Nicky Whiffin @nickywhiffin
Associate Prof & Henry Dale Fellow @bdi_oxford @HumanGeneticsOx | Computational Rare Disease Genomics | Non-coding | @StAnnesCollege | @nickywhiffin.bsky.social rarediseasegenomics.org London, UK Joined November 2016-
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Today is a day for all those people who have yet to receive a diagnosis for themselves or their child. It can be a difficult place to be, but luckily there is a fabulous organisation @SWAN_UK who can help! #udcd2024
Last chance to register for our online course! All lectures will be online next week (and remain online for several months). You can use a chat to ask questions to lecturers. Only 50€ registration cost - for a world class line-up of speakers. eshg.org/bertinoro0-1
Recently out on #bioRxiv: our updated approach to identify regional variability in missense mutation intolerance (“constraint”) in protein-coding genes using the gnomAD database (@gnomad_project). 1/n biorxiv.org/content/10.110…
Our paper “Investigating the role of cis-eQTLs in modifying the penetrance of putatively damaging, inherited variants in severe neurodevelopmental disorders” (NDDs) is out in Scientific Reports! Three interesting findings led to this study: nature.com/articles/s4159…
We are getting amazing emails from people who have identified individuals with RNU4-2 variants ❤️ If this is you, and your families are interested in meeting others or being part of a community, then please direct them to @Unique_charity (@swynn_unique).
We are getting amazing emails from people who have identified individuals with RNU4-2 variants ❤️ If this is you, and your families are interested in meeting others or being part of a community, then please direct them to @Unique_charity (@swynn_unique).
We are hosting the awesome @GosiaTrynka next Monday! If you are around, don’t miss the opportunity to hear about her latest research!
We are hosting the awesome @GosiaTrynka next Monday! If you are around, don’t miss the opportunity to hear about her latest research!
This seems like a GREAT reason to know that the exome is defined by what's spliced, not what's translated.
This seems like a GREAT reason to know that the exome is defined by what's spliced, not what's translated.
Can we detect the #RNU4-2 recurrent variant in exome / panel data ? In a nutshell : YES ! (with some luck) 🧵1/5 @nickywhiffin @ChristelDepienn
Firstly, you only find what you look for. This is the most recurrent single mutation in the genome in patients with neurodevelopmental disorders, but has been missed to date because it falls outside protein-coding regions. A good reminder to think outside the ORF. (2/3)
Yuyang identified a highly recurrent de novo variant in @GenomicsEngland, in 46 individuals, all with undiagnosed NDD. It was not in any diagnosed probands, or unaffected individuals in GEL. It is absent from population cohorts, apart from a single individual in UK Biobank. 3/n
Cecilia Lindgren @ceclindgren
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114 Followers 49 Following PhD student - Computational Rare Disease Genomics group with @nickywhiffin, Big Data Institute, University of Oxford (https://t.co/bfBM3lqX75)Christel Depienne @ChristelDepienn
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282 Followers 181 Following Postdoctoral Research Fellow, Genetics of Complex Traits, Exeter. Interested in rare variant association analysis, whole genome sequencesExeterGenomes @ExeterGenomes
2K Followers 466 Following Latest news and updates from the exome and genome sequencing service at the Exeter Genomics Laboratory, Royal Devon University Healthcare NHS Foundation TrustEmily Brookes @EBrookesNeuro
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56 Followers 129 FollowingThe Genetics Society @GenSocUK
5K Followers 334 Following The Genetics Society was founded by William Bateson & Edith Rebecca Saunders in 1919 & is one of the oldest learned societies devoted to Genetics in the world.Today was a day in which I was super grateful for the people I encountered just being nice. Can be really tough having a kid who has muscular dystrophy. Just ordinary kindness from people rather than agro (strangers who have no idea what I’m carrying) was so precious. #Kindness
Excellent first annual meeting of the Wellcome PARADIGM team, paradigmgenomics.org. We shared some exciting science and had fun along the River Exe! @ensembl @deciphergenomic @tisimpson @HelenVFirth @PsyEpigenetics @jmarshlab @drjamesware @ExeterMed
Excited to finally have this preprinted: Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing by @pbcenturion and many. @CRGenomica @sangerinstitute biorxiv.org/content/10.110…
@nickywhiffin @platzer_k @quenchentin @ConnectRD @Solve_RD Great job @quenchentin. Congratulations, and thank you on behalf of the many families that are finally going to receive a diagnosis as a result of your work!
@nickywhiffin It was a great bonding experience! Hope you enjoy the rest of your stay in lovely Sicily - thx again for coming and sharing your science!
So in summary, @SteveLaurie42 & @Solve_RD not only helped us to make 1 new #RNU4-2 diagnosis, but motivated us to likely identify 2 more... 👌 🙏 I mean, when do we have the chance for re-analysis of only 18 bp & get these results? Likely not again... @ChristelDepienn 🙋♂️ 😉 /5
We likely made a new #RNU4-2 diagnosis at @hug_leipzig due to the help of @SteveLaurie42 & the awesome @Solve_RD infrastructure. 🙂 This case was not included in our own re-analysis of old data using @francois_leco example last week... 🥲 But wait... there is more... /1
Can we detect the #RNU4-2 recurrent variant in exome / panel data ? In a nutshell : YES ! (with some luck) 🧵1/5 @nickywhiffin @ChristelDepienn
Always an absolute pleasure and privilege to plan / attend ‘Genetics of NDV’ meeting in quaint Troina, Sicily! SUPERB science, people, food, wine, hospitality. This meeting is a true gem, as is Sicily. #raredisease #Genetics
That amazing paper you spent years on? That amazing breakthrough you had? Very likely you built this following the work of others (very few exceptions), just as others will build off yours. Science is a continuum. Want to leave a lasting legacy in science? Be generous & be kind.
Neil Gaiman’s story about imposter syndrome rewired my brain.
does anyone have any useful sentences that will change my life immediately upon being read?
Incredible example of how non-coding RNAs can bear important (and often unexpected) findings
Would you believe me if I told you that a single variant in a non-coding RNA explains ~0.5% of all undiagnosed individuals with neurodevelopmental disorders (NDD) in @GenomicsEngland ??? I didn’t initially either, but here is the story of RNU4-2 🧵1/9
Sunset in Trieste, few min ago.
@nickywhiffin @Unique_charity @swynn_unique I would encourage the families to start a foundation and then encourage this foundation to join @RareEpilepsy, which is a consortium of roughly 100 different epilepsies.
@BeSHGenet @Bouckaert_M kicked off the parallel @BeSHGenet sessions with an exciting talk on #ASO therapy targeting a 5'UTR mutation of a retinal disease gene 🧬 👁️ @RAREMED1
Amazing story about how mutation in noncoding sequences can impact human health!
Would you believe me if I told you that a single variant in a non-coding RNA explains ~0.5% of all undiagnosed individuals with neurodevelopmental disorders (NDD) in @GenomicsEngland ??? I didn’t initially either, but here is the story of RNU4-2 🧵1/9
@nickywhiffin @quenchentin thanks for replying. We're having a look now in ~1500 children's cancers with WGTS, from #ZeroChildhoodCancer & will let you know if we find anything
This seems like a GREAT reason to know that the exome is defined by what's spliced, not what's translated.
But finally to highlight that this region, despite being within a highly conserved exon is not covered in ‘whole’ exome sequencing (as it is a non-coding RNA). This is a clear example of the power of genome sequencing to uncover novel diagnoses for patients. 9/9
@nickywhiffin Great work Nicky and team! Have you seen this region altered somatically?