Andrea ganna @andganna
Associate Prof in health data science @HiLIFE_helsinki @FIMM_UH - MGH/Harvard - Playing with all kind of data - https://t.co/BffgAbQTls dsgelab.org Helsinki, Finland Joined December 2012-
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“Horizon Europe must be reinforced by focusing on the most effective programmes such as the European Research Council” @EmmanuelMacron stressed Europe should become “a continent that invests in breakthrough innovation & advanced fundamental research". sciencebusiness.net/horizon-europe…
“Horizon Europe must be reinforced by focusing on the most effective programmes such as the European Research Council” @EmmanuelMacron stressed Europe should become “a continent that invests in breakthrough innovation & advanced fundamental research". sciencebusiness.net/horizon-europe… https://t.co/0HocS4wKZd
Yes! The system works. We accessed the data, processed, cleaned, and sent it back for others to use. No gatekeeping. All data should be accessible not by contacting researchers but via impartial, third-party institutions.
⚠️Don’t miss!!!!⚠️ 🚨@AIESItaly mid-year meeting 📍@MinisteroSalute 📆 June 11 👉registration: aiesweb.it/riunione-inter… @cinzia_dinovi @vincenzo_atella @pietrobiroli @Gabri_EllaConti @MarcoUnipd @andganna #FrancescoSaverio #Mennini
📢 New pre-print! We tried to understand why autoimmune disease and type 1 diabetes co-occur in families using nationwide registries and genetic data. @FIMM_UH @FinnGen_FI #FinRegistry @HiLIFE_helsinki 👇👇👇👇
📢 New pre-print! We tried to understand why autoimmune disease and type 1 diabetes co-occur in families using nationwide registries and genetic data. @FIMM_UH @FinnGen_FI #FinRegistry @HiLIFE_helsinki 👇👇👇👇
T1D and other autoimmune diseases (AIDs) co-occur in families. How parental AIDs impact T1D risk in offspring and how much of the familial risk is explained by HLA and non-HLA variants? 👩🏻🦱🧔🏻♂️👶🏻 Find out more from this thread 🧵 and our new preprint ⬇️!medrxiv.org/content/10.110…
way to go!!
Interestingly, range restriction in a predictor will bias the correlation but not the slope, whereas range restriction in an outcome will bias both the slope and the correlation
This comment is very 2010
Major development in PGS implementation.
Would you believe me if I told you that a single variant in a non-coding RNA explains ~0.5% of all undiagnosed individuals with neurodevelopmental disorders (NDD) in @GenomicsEngland ??? I didn’t initially either, but here is the story of RNU4-2 🧵1/9
Would you believe me if I told you that a single variant in a non-coding RNA explains ~0.5% of all undiagnosed individuals with neurodevelopmental disorders (NDD) in @GenomicsEngland ??? I didn’t initially either, but here is the story of RNU4-2 🧵1/9
Can we use biobank #EHRs to study the genetics of drug efficacy? 💊🧬 How to best model drug response and longitudinal biomarker progression in an unbiased manner? 📊 Do #PRS predict treatment outcomes? Check out our new preprint doi.org/10.1101/2024.0… and the thread 🧵 below👇
We are seeking a data manager to join the Data Science and Genetic Epidemiology Lab lead by Dr. @andganna. The data manager will have a key role in one of the largest registry-based projects in Finland. Read more about this exciting #JobOpportunity: jobs.helsinki.fi/job/3042024-Da…
More than 230 new doctoral researcher positions available – Call for applications ends on 22 April! Apply now 👉helsinki.fi/en/news/studyi…+
Prof. Candice Odgers: "The evidence is equivocal on whether screen time is to blame for rising levels of teen depression and anxiety — and rising hysteria could distract us from tackling the real causes." nature.com/articles/d4158…
Papers covered by @nytimes get cited more. Is that causal or just selection bias? Almost surely causal: papers that NYT *wanted* to cover but *didn't* because of a strike got cited similarly as unwanted (but equally prominent) papers nejm.org/doi/10.1056/NE…
Counterintuitive results 🤔
We are so excited to start exploring #longread sequencing of 10,000 Estonian genomes with @PacBio 🧬improved genotype imputation reference panel 🧬more precise #pharmacogenetics 🧬actionable genetic findings for #personalizedmedicine @ESTbiobank pacb.com/press_releases…
Veera Rajagopal @doctorveera
17K Followers 4K Following MBBS, MD, PhD | GWAS storyteller | Scientist at Regeneron | Human genetics & drug discovery in Neuroscience & Psychiatry | He/HimAbdel Abdellaoui @dr_appie
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146 Followers 338 Following Associate Principal Statistical Geneticist @5PrimeSciences. Honourary Senior Research Associate @MRC_IEU. Causal inference and statistical genetics 🇨🇦 🇬🇧Jakob Ørtvig @rtvig_j
327 Followers 537 Following Oxford Nanopore employee, work related tweets, views are my ownChelz @Chelzg__
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4K Followers 268 Following Associate professor at the Hebrew University. Statistical, population, and medical genetics. Preimplantation genetic testing. Views my own. https://t.co/hlwDnVcr9OGWAS_lit @GWAS_lit
7K Followers 183 Following Pre-publication manuscripts for genome-wide association studies. By @wpgilks Also see @genomic_pred and @Mendelian_lit #GWAS #genetics #genomics #medicineFIMM HelsinkiUni @FIMM_UH
3K Followers 453 Following Institute for Molecular Medicine Finland FIMM in the University of Helsinki - Suomen molekyylilääketieteen instituutti (FIMM), Helsingin yliopistoFinnGen @FinnGen_FI
3K Followers 193 Following FinnGen research project is an expedition to the frontier of genomics and medicine. FinnGen-tutkimushanke vie suomalaiset löytöretkelle genomitietoon.brent richards @BrentRichards19
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5K Followers 6 Following Passionate about fundamental research and human curiosity and creativity in all areas, my lab, EMBO (past director), ERC (current president). But family wins.Laufey Amundadottir @amundadottir1
148 Followers 275 FollowingAIES @AIESItaly
419 Followers 535 Following The Italian Health Economics Association (AIES) is a non-profit Association open to all scholars interested in Health Economics and Management.Anna-Leena Vuorinen @Vuoriann
35 Followers 128 Following Health data scientist (PhD, Title of Docent) at Institute for Molecular Medicine Finland FIMMDr Luisa Zuccolo @Luisa_Zu
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142 Followers 46 Following HST M.D. student @HarvardMed @mit_hst | Genetic epidemiology @broadinstitute | Previously biomedical informatics @StanfordHealth Data Science @HdsErasmusMC
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1K Followers 186 Following Devoted to Digital Health and Systems Medicine - tweets reflect my private thoughtsTuomo Hiippala ➡️.. @tuomo_h
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783 Followers 486 Following MD / PhD candidate @ HMS/Broad \\ Studying convergence of common + rare genetic variation in complex traits \\ co-host @BtApodLuke Pilling @lcpilling
1K Followers 1K Following PhD. Genetic epidemiologist researching disease mechanisms. ❤Rstats. UCU rep✊. Views my own. He/him. 🏳️🌈ally. 🇬🇧🇪🇺. 📷 https://t.co/v48ayCSOocEuropean Society of H.. @eshgsociety
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753 Followers 463 Following Currently PostDoc at UC Berkeley. My interest are Y chromosomes, archaic introgression, method development and population genetics.MarioniGroup @MarioniGroup
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10K Followers 59 Following @Stanford professor. Chan-Zuckerberg investigator. Sloan Fellow. AI for biotech + health. Making AI more trustworthy, reliable and human compatible.Chia-Yen Chen @ChiayenChen
344 Followers 546 FollowingBen Goldacre @bengoldacre
451K Followers 3K Following Prof of EBM @UniOxford, author, Bad Science, more. I run https://t.co/NsF4BBoZ5V making tools+papers from data https://t.co/v6679t19rv https://t.co/bGysxEAgnnToday is our birthday!! 🎂#15yearsGWASCatalog🎂 We are the result of all #gwas community and the effort of current and past team members, curators, data scientists, developers, managers, team and project leads, @embl @emblebi and @genome_gov !! Thanks all for your contribution 👇
Most childlessness is not by choice, this is a repeatedly demonstrated fact. The single best early-life predictor of childlessness is experience of mental illness.
Ok it's interesting that 7% of parents over 45 wouldn't have kids if given a redo on life, but it’s also wild that fully 50% of childless people would have kids if given a do-over. Need to profile the 3% of childless folks who say they'd have 6+ kids if given the chance 😂.
⚠️Don’t miss!!!!⚠️ 🚨@AIESItaly mid-year meeting 📍@MinisteroSalute 📆 June 11 👉registration: aiesweb.it/riunione-inter… @cinzia_dinovi @vincenzo_atella @pietrobiroli @Gabri_EllaConti @MarcoUnipd @andganna #FrancescoSaverio #Mennini
@andganna @FIMM_UH @FinnGen_FI @HiLIFE_helsinki Interesting! In 2 weeks I will be opponent at a dissertation where one of the papers is about, exactly this!
another great work from the lab - huge congrats @feiyi_wang !!
T1D and other autoimmune diseases (AIDs) co-occur in families. How parental AIDs impact T1D risk in offspring and how much of the familial risk is explained by HLA and non-HLA variants? 👩🏻🦱🧔🏻♂️👶🏻 Find out more from this thread 🧵 and our new preprint ⬇️!medrxiv.org/content/10.110…
New work about the Finnish pedigree and autoimmune diseases from @feiyi_wang, co-supervised by me, @andganna, and @TinskuT! Preprint: medrxiv.org/content/10.110…
T1D and other autoimmune diseases (AIDs) co-occur in families. How parental AIDs impact T1D risk in offspring and how much of the familial risk is explained by HLA and non-HLA variants? 👩🏻🦱🧔🏻♂️👶🏻 Find out more from this thread 🧵 and our new preprint ⬇️!medrxiv.org/content/10.110…
T1D and other autoimmune diseases (AIDs) co-occur in families. How parental AIDs impact T1D risk in offspring and how much of the familial risk is explained by HLA and non-HLA variants? 👩🏻🦱🧔🏻♂️👶🏻 Find out more from this thread 🧵 and our new preprint ⬇️!medrxiv.org/content/10.110…
Happy to share our paper: Integrative machine learning approaches for predicting disease risk using multi-omics data from the UK Biobank . biorxiv.org/content/10.110…
I've worked tirelessly on cracking this problem with generations of students. It’s an extremely challenging area of ML and seeing it come closer to clinical use, where it will empower clinicians & patients alike, is very satisfying: nature.com/articles/s4159… #AI #PatientEmpowerment
Additive effect of carrying multiple rare variants in monogenic DDG2P genes and common variant polygenic score for educational attainment in @uk_biobank. Lovely work from former PhD student Becca Kingdom with @mnweedon @ExeterMed @NatureGenet doi.org/10.1038/s41588…
🚨 New paper! Using data from 🇫🇮 twins born 1880-1957, we find no evidence for changes in the heritability of smoking in adulthood across birth cohorts despite notable cohort differences in smoking prevalence and quantity. Led by @stephzellers @FIMM_UH academic.oup.com/ntr/article/do…
Hum genetics can be very helpful but it’s not the only route to drug discovery. Pharmacology is different from physiology. And human genetics perturbs systems from conception while drugs act on the developed organism.
#Genetics and drug discovery For SGLT2i and GLP1RA directionally supportive yet drug development largely driven independent of genetic evidence #T2D #heartdisease nature.com/articles/s4158…
Interestingly, range restriction in a predictor will bias the correlation but not the slope, whereas range restriction in an outcome will bias both the slope and the correlation
The University of Zurich, a globally respected institution (ranked 80th globally in 2023, also where Einstein got his PhD), withdrew from international university rankings. Why? Because “when a measure becomes a target, it ceases to be a good measure”. bit.ly/49FM5Gm
🎉📣 Latest preprint from the lab: Genome-wide analyses of variance in blood cell phenotypes provide new insights into complex trait biology and prediction medrxiv.org/content/10.110… Led by the exceptional @RXiang5 (now head of comp bio at AgriBio @VicGovAg)!
The real question everyone should be asking about Pacbio's $PACB stock market plunge is whether they will have an #ASHG24 party this year🤔
Is the offspring’s DNA methylome a possible mechanism through which direct and indirect genetic effects act? Yes! In this new @NTRscience preprint, we found 51 offspring CpGs related to parental or offspring PGSs for schizophrenia, EA, BMI & height. 1/4
Intergenerational transmission of complex traits and the offspring methylome medrxiv.org/cgi/content/sh… #medRxiv
Happy to share paper Efficient storage and regression computation for population-scale genome sequencing studies biorxiv.org/content/10.110…
Interested in risk prediction using machine learning? Take a look at this new model using a super learner to predict #CKD prognosis. Developed in Canada and validated in Denmark and Scotland. @pietro_ravani @kaperen @simonkokjensen @DCEAarhus @CONNECT_RM @AUHdk @HealthAarhusUni
This NEW research in @bmj_latest trained and tested a super learner strategy for risk prediction of kidney failure and mortality in people with moderate to severe chronic #kidney disease, @pietro_ravani and colleagues #ISNWCN bmj.com/content/385/bm…
This NEW research in @bmj_latest trained and tested a super learner strategy for risk prediction of kidney failure and mortality in people with moderate to severe chronic #kidney disease, @pietro_ravani and colleagues #ISNWCN bmj.com/content/385/bm…