Florian Markowetz @markowetzlab
Computational Oncology at Cambridge | chromosomal instability | genomes and images | selfish about reproducibility | all fox, no hedgehog markowetzlab.org Cambridge, England Joined November 2011-
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🗣️ Mark your calendars! 🧬 The international lecture series on chromosomal instability is coming to you soon. 🤓 Starting with superstar speaker @skimomiks 🔥 May 17 on zoom.
Join us for an exciting opportunity to foster lab-in-the-loop approaches for causal discovery. #Heidelberg
Join us for an exciting opportunity to foster lab-in-the-loop approaches for causal discovery. #Heidelberg
Several faculty openings @unisouthampton in teh next two years. A good time to join and a nice environment to pursue scholarship. [ And, I say, you heard it from the cynical end of the spectrum 😂]
Several faculty openings @unisouthampton in teh next two years. A good time to join and a nice environment to pursue scholarship. [ And, I say, you heard it from the cynical end of the spectrum 😂]
65K gene pairs screened across multiple cell lines, 2 tissues - data waiting for you to interpret and make important discoveries! collaboration with @OpenTargets @Garnettlab OT Validation lab and industry partners!
65K gene pairs screened across multiple cell lines, 2 tissues - data waiting for you to interpret and make important discoveries! collaboration with @OpenTargets @Garnettlab OT Validation lab and industry partners!
This is good Also a great lecture on how to make a title boring
This is good Also a great lecture on how to make a title boring
Interested in joining @SysBioCurie in Paris to work on machine learning for multi-modal cancer data analysis ? We are looking for a postdoc to build efficient predictors of treatment response and shed light on the mechanisms of tumor progression. 👉 t.ly/VGmfk
This would be a cool course to teach!
Behind the Lab Coat: Dr Ania Piskorz, Head of Genomics | Cancer Research... youtu.be/l4kGiKf9d-4?si… via @YouTube
Internship at the Broad on-site in Cambridge MA! - develop methods to interpret microscopy images - apply deep learning - work at the interface of computer science and biology - ~6 months starting June 2024 - BS/masters/PhD student or recent grad Pls RT! broad.io/CSInternship
My lab is hiring postdocs to study aneuploidy's role in cancer! We're applying next-gen chromosome engineering approaches to uncover how gene dosage imbalances impact drug sensitivity, metabolism, immune evasion, and more. Send me your CV+cover letter if interested. Please RT!
My lab is hiring postdocs to study aneuploidy's role in cancer! We're applying next-gen chromosome engineering approaches to uncover how gene dosage imbalances impact drug sensitivity, metabolism, immune evasion, and more. Send me your CV+cover letter if interested. Please RT! https://t.co/JXiIDjcTeL
📌Are you an experienced project manager? ❓Want to join a team of dedicated nurses and clinicians in ground-breaking research in the early detection of cancer? ❗️Join us as Clinical Project Manager for the BEST4 Trial at @EarlyCancerCam ! #HiringAlert jobs.cam.ac.uk/job/45517/
We are excited to announce amazing opportunities to join our team, working on an incredible collaborative project aimed at developing generative AI to model human development alongside @Muzz_Haniffa. hiring at both predoctoral and postdoctoral levels. Deadline 14/04, pls share…
We are excited to announce amazing opportunities to join our team, working on an incredible collaborative project aimed at developing generative AI to model human development alongside @Muzz_Haniffa. hiring at both predoctoral and postdoctoral levels. Deadline 14/04, pls share… https://t.co/EyeRqyuD9Q
🌟 Come and shine 🌟 🔥 PhD at Cambridge 🔥 🤖 AI for Early Detection of Gastric Cancer 👍 jobs.cam.ac.uk/job/45505/
🤩 Come and join us 🤩 🤓 PhD in Cambridge 🤖 Multi-modal risk prediction of oesophageal cancer 👉 jobs.cam.ac.uk/job/45504/
🎉 Congratulations to the winner of the “Entrepreneurial Group Leader of the Year , Maike de la Roche @delaroche_cruk for demonstrating leadership, innovation, and entrepreneurial spirit. #IEAwards24 #OnMyHorizon
We are hiring! 🥳 Assistant / Associate Professor of Human Genetics (Honorary Consultant) For Clinical Geneticists with academic interest! 🤓 jobs.cam.ac.uk/job/45563/
#SignallingAlliance seminar alert! Next up on 04.04 @Michael_Boutros will talk to us about signalling and functional genomics and @zauggj about systems epigenetics. Please register interest here: forms.gle/sQ2dgJbdsCNMuw…… and we will send you the link.
The European Bioconductor Conference 2024 will take place in Oxford, UK, on 2-6 September. Abstract submission deadline: 26 April! eurobioc2024.bioconductor.org
I am super excited - we are recruiting a new Junior Group Leader at @CRUK_MI !! Are you looking to start your independent career with fantastic colleagues in a supporting environment with outstanding infrastructure, then have a look here: nature.com/naturecareers/… Please RT
Two professorship positions in computational biology of aging available @CECAD_ @UniCologne , scroll down for the English version berufungen.uni-koeln.de/tender/showPdf…
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Congratulations to Wieye, with his first publication from our lab. “ZMIZ1 enhances ERα-dependent expression of E2F2 in breast cancer” jme.bioscientifica.com/view/journals/…
Today I will give my entrance speech at the @RACiencias I will revise the work we have done at @bbglab and provide my future vision. The backbone of the speech is Cancer as a Darwinian evolutionary process Feel free to join! (in Spanish) I feel very honoured and grateful
Join us for an exciting opportunity to foster lab-in-the-loop approaches for causal discovery. #Heidelberg
We are seeking a postdoctoral researcher at @embl!! 🦸♀️ Are you passionate about applying machine learning to unravel the causal mechanisms of gene regulation? Apply now: embl.org/jobs/position/…
Excited to share Nicheformer! Led by @Alejandro__TL & @AnnaCSchaar, Nicheformer is a foundation model for single-cell & spatial omics. Its innovation is going beyond disassociated analysis to capture & predict local tissue context at single-cell level. biorxiv.org/content/10.110…
Several faculty openings @unisouthampton in teh next two years. A good time to join and a nice environment to pursue scholarship. [ And, I say, you heard it from the cynical end of the spectrum 😂]
Ready to advance your academic career? 🚀 We’re recruiting colleagues to help us achieve the remarkable in education, research excellence and enterprise. Start your journey with us today 👉 brnw.ch/21wIVL7 #WeAreUoS #JoinUoS
It was a pleasure, thank you for inviting me.
The day concluded with a fantastic keynote lecture from @eriksahailab @TheCrick, who unpicked how the tumour microenvironment sculpts cancer invasion and therapy resistance. Thank you for joining us Erik! #BCIShowcase24
Postdoc and student persuading PI to submit to bioRxiv
Two ants drag a cockroach by its antennae
This gives me hope that this could eventually be clinically translated. Great team effort all around, and a special shout out to @JeffMaltas for his role as co-supervisor. He’s gunna be a great PI (and he’s on the market for jobs…) \end{thread} @KevinWoodUM @hinczewskilab
Congratulations to my Cambridge colleague Shankar Balasubramanian, his colleagues David Klenerman and Pascal Mayer on the award of a Canada Gairdner International award for their invention of short read massively parallel DNA sequencing. gairdner.org/winners
What a gorgeous place for the #DS4S conference at the Casino Bern this morning! Really enjoyed my keynote in this awe inspiring setting, and looking forward to connect with many great minds for more equally inspiring discussion about data science for discovery!
Wrapping up #AACR24 with two of the most brilliant minds of oncology , @VivekSubbiah and @cncurtis 🤩🤩🌴
We're currently hearing from Rebecca Fitzgerald in the 'from precursors to prevention' session on the evolutionary trajectories of Barrett’s and how to intercept oesophageal cancer. Join us now to hear this engaging talk. @EarlyCancerCam | #AACR24
Kommenden Freitag steigt die Party „History meets Techno“ im Kickerkeller in Erfurt. Alle sind eingeladen! @KathKroeger hat einen lesenswerten Artikel darüber geschrieben 👇🏽👇🏽 thueringer-allgemeine.de/regionen/erfur…
Spring is here! 🌸 17th successful hibernation ✅ Always amazing to witness 🤩👏🏻 Just in time for my birthday 🎉 🥰
On my way to #AACR24 — looking forward to our session on Sunday morning 😊🌴
We also agree that implementation details (HVG selection, SNN construction, DE pseudocount) - and how we set defaults - are important We know, and do our best to set these reasonably and robustly. I know the scanpy authors do as well, even if we make different choices
But I agree with Lior/the authors that these details get lost in the codebase, and need more explicit documentation and discussion. We appreciate the feedback and will prioritize this, ideally in a way that encourages community feedback
Registration is open for #EACR2024 at #Rotterdam Great line-up of speakers! Much to learn for the next-generation 😉. Find out more here: 2024.eacr.org @EACRnews