Troyanskaya Lab @TroyanskayaLab
This account is run by Olga Troyanskaya and her group focusing on computational functional genomics at Princeton University. function.princeton.edu Princeton, NJ Joined August 2011-
Tweets59
-
Followers545
-
Following77
-
Likes26
@andrewsu you also might find MetaSRA useful metasra.biostat.wisc.edu
The Sei web server on humanbase (hb.flatironinstitute.org/sei) is now updated to add the capability of computing Sei predictions including sequence class scores for any user-provided sequences or variants (big thanks to @wongak!)
@kathyxchen’s paper for sequence-based global map of regulatory activity is now out (nature.com/articles/s4158…)! Congratulations to all co-authors @wongak @OlgaTroyanskaya. Thanks to @anshulkundaje and @nameluem for the News & Views!
Machine learning in materials science! All our articles on machine learning in one collection, featuring @EKumachevaGroup @A_Aspuru_Guzik @TroyanskayaLab @draykol @SmitBerend @GormleyLab @xmwebb @NAresgroup @MKrallinger and many more - Check it out 😎go.nature.com/3gdwuVw
Our new preprint (w/ @zhou_jian) is out! 🎉 We developed sequence classes, which allow for easily interpretable yet systematic quantification of the regulatory activities for any sequence & variant, using deep learning-based sequence modeling. (1/13) doi.org/10.1101/2021.0…
Decoding disease: from genomes to networks to phenotypes go.nature.com/3fq7VnT #Review by @wongak, Rachel S. G. Sealfon, Chandra L. Theesfeld & @OlgaTroyanskaya @TroyanskayaLab @FlatironCCB @FlatironInst @Princeton @PrincetonHive
Check out our latest review in NRG on decoding disease - from genomes to networks to phenotypes! nature.com/articles/s4157…
Check out our review of machine learning methods to model multicellular complexity!
High-throughput experiments generate large data sets that allow the study of multicellular complexity; #MachineLearning can help analyse, interpret and model these datasets. Read more in the Review by Rachel Sealfon, @wongak & @OlgaTroyanskaya: go.nature.com/3hJ0ucT
High-throughput experiments generate large data sets that allow the study of multicellular complexity; #MachineLearning can help analyse, interpret and model these datasets. Read more in the Review by Rachel Sealfon, @wongak & @OlgaTroyanskaya: go.nature.com/3hJ0ucT
Combing through millions of possible protein combinations to assemble a catalog that could be used to precisely target only cancer cells while leaving normal ones alone. Kudos to @limlab @UCSF @OlgaTroyanskaya @TroyanskayaLab ow.ly/QXMh50CylWC
It's #OlgaFest today in Michigan! 😀 @OlgaTroyanskaya's academic children & grandchildren are speaking in today's @WomenPlusData webinar hosted jointly by @UMich and @michiganstateu!
Excited to host the final webinar of this season: 'Data Science in Biomedical Research' featuring Maria @ChikinaLab as our keynote speaker @PittTweet! ⚡ talks Anna @annakopoulos Kayla @kaylainbio Stephanie @slepphickey @CMSE_at_MSU @KrishnanLab Regstr: forms.gle/nbWrEdPR7fDPcK…
Check out humanbase.io - from tissue-specific networks to mutational regulatory impact to disease gene prediction. Project lead by the amazing @wongak Nicely described in simonsfoundation.org/2020/11/10/fin… @SimonsFdn @FlatironInst @FlatironCCB
thrilled to be a part of this collaboration and apply our cell-type specific networks at @HumanBaseFI to COVID-19.
SARS-CoV-2 receptor networks in diabetic and COVID-19 associated kidney disease kidney-international.org/article/S0085-… . @MiKTMC @UMichKidney @umichmedicine @Berthiercc @OlgaTroyanskaya .
SARS-CoV-2 receptor networks in diabetic kidney disease, BK-Virus nephropathy and COVID-19 associated acute kidney injury medrxiv.org/cgi/content/sh… #medRxiv
Hi genomics community! I recently started my own group at UTSW. We are looking for postdoc and students interested in machine learning and genomics to join us in our adventures in new frontiers! Please RT or forward to any potential interested candidates zhoulab.io/home#join-us
Our latest paper on noncoding contributions in #autism using deep learning models is out in @NatureGenet. De novo noncoding variants contribute to # of cases comparable to coding. With @DarnelR @zhou_jian @pazpark @chandralt4 @SimonsFdn @Princeton #WGS rdcu.be/bEAto
Great description of our work out at Nature Genetics: "AI Accurately Predicts Effects of Genetic Mutations in Biological Dark Matter" simonsfoundation.org/2018/07/16/ai-… @FlatironInst @FlatironCCB @SimonsFdn @EPrinceton @PrincetonCS @princetonideas
ExPecto predicts tissue-specific expression and variant effect ab initio from sequence, prioritizes all GWAS variants, generates in silico mutagenesis of all TSS proximal regions, and provides a link to evolutionary constraints on gene expression. rdcu.be/233k
Proud of our discovery of noncoding regulatory signal in autism. Independently confirmed in discovery and replication cohorts for both DNA and RNA regulation. #deeplearning #WGS #autism #ASD biorxiv.org/content/early/…
Great talk from @OlgaTroyanskaya on predicting effects of mutations with DeepSEA and now being able to predict tissue specific gene expression with new ExPecto approach. Valuable for GWAS causal variant prioritization and de novo calling of disease variants #T2G18
Lior Pachter @lpachter
73K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
Michael 英泉 Eisen @mbeisen
73K Followers 13K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/77P0LDe6VR.
Jacob Schreiber @jmschreiber91
5K Followers 1K Following Programmable Genomics Lab @UMassGCB, Technical Steering Committee @NumFOCUS. Prev @impvienna @StanfordMed. Studying genomics, ML, and fruit. Opinions my own.
Kevin K. Yang 楊凱�... @KevinKaichuang
23K Followers 6K Following Principal Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
Barbara Engelhardt @BeEngelhardt
10K Followers 994 Following Machine learning, statistical genomics, ML4 health, senior investigator at Gladstone Institutes, professor at Stanford, single mom to four kids. she/her
Manolis Kellis @manoliskellis
53K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Marinka Zitnik @marinkazitnik
9K Followers 224 Following Associate Professor at Harvard | @Harvard @KempnerInst @broadinstitute | @ProjectTDC @AI_for_Science @ScientistTools | https://t.co/AHessmLLO9
Jason H. Moore, PhD @moorejh
34K Followers 17K Following Chair, Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles. Informatician. Data scientist. AI. Atari enthusiast. FSU & UMich grad.
Denis Wirtz @deniswirtz
47K Followers 8K Following VP for Research @JohnsHopkins, T.H. Smoot Professor @HopkinsEngineer & @HopkinsMedicine, Co-founder @INBT_JHU, Lab: https://t.co/9OtmgB6InU Tweets are my own.
Michael Schatz @mike_schatz
16K Followers 1K Following Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University
Robson Carvalho @rcarvalho_7
411 Followers 1K Following Dad | Husband | Associate Professor - São Paulo State University @Unesp_Oficial | Scientist | Cancer Cachexia Researcher | Bioinformatics Enthusiast.
0xRobinsonJim @0xRobinsonJim
121 Followers 3K Following Internet / Content / Telecoms entrepreneur - technical business development. Passion: distributed network topologies: Blockchain, Bitcoin, Ethereum @RobinsonJim
Waggoner Lab @LabWaggoner
13K Followers 8K Following Research lab of Dr. Stephen Waggoner. Opinions expressed are Dr. Waggoner's alone and not on behalf of lab staff or employer. @labwaggoner.bsky.social
Rohan Nath @Rohan_Nath_
233 Followers 651 Following Computational Biologist | Integrated PhD @IISER_BERHAMPUR | First-generation college graduate | Tweeting in personal capacity
Lisa @Lisa57140114363
25 Followers 3K Following
Marcela Briones @MarcelaCBriones
52 Followers 247 Following Turning Science into Therapies & Conversations | Cancer Biology | ncRNAs | T cell therapy | Podcasting Science for Latin America @ciencia_ligera
Blitoy @Blitoy9wNe
28 Followers 2K Following
N Klaassen @nklaassen10
2 Followers 16 Following
black_box @blackbox_pi
138 Followers 917 Following Tweeting about #AI and #genomics | interpretable ML models | perturbation models | transcription factors | cis-regulatory elements | motifs | gene regulation
Gang Li @FrankLeeGangLi
285 Followers 2K Following Co-Principal Investigator at Changping Laboratory (with @XieSunney).
Bo Vagner Hansen @bovagnerhansen
88 Followers 1K Following Bioinformatics, mathemathics, science. Doing my PhD at @NATsdu
Yunzhuo (Emily) Zhou @YunzhuoZhou
60 Followers 156 Following
morescifi @morelifemoresci
1 Followers 3K Following
Genevieve Housman @gahousman
1K Followers 952 Following Group Leader @MPI_EVA_Leipzig interested in primate functional genomics in the skeleton. 🐒🦴🧬🧫
asim kadav @4sim
339 Followers 631 Following Research Lead/Manager - Multi-modal Models; PhD from @WisconsinCS Prev. https://t.co/C5PXcE0bqG
Slyne @Slyne785089
21 Followers 1K Following
Kevin Ly @lifeisscience_5
101 Followers 504 Following PhD Student in Trynka/Lotfollahi lab at Wellcome Sanger Institute • University of Cambridge | Roche | ETH
Muhammad Kabir @mdkabircs
27 Followers 295 Following Postdoctoral Researcher at BMC, Lund University, Sweden. https://t.co/Vp4urjLwOM
yellowhead @TayfunCinleti
2 Followers 2K Following
enenhenhao @enenhenhao
1 Followers 75 Following
Rebecca Smith @rebcsmith
108 Followers 298 Following neuroscience PhD at @Brainmind_EPFL | genetics, neuroengineering, drosophila 🧬 🧠 🔬🪰 | mountain enthusiast | she/her 🏳️🌈
Omenn-Darling Bioengi... @omenndarlingbio
551 Followers 215 Following Princeton University's ODBI promotes new directions in research, education and innovation at the intersection of engineering and life sciences.
Ingyeong Koh @koh2ng0
9 Followers 175 Following
Prasida Holla @holla_prasida
23 Followers 321 Following
Michael Hunger 🇪�... @mesirii
5K Followers 756 Following Happy dad of 3 girls GraphAddict @neo4j JavaChampion Code https://t.co/yHh2uGuhq3 Words https://t.co/erpiQ4BY9W Network https://t.co/s6kf1x88G8
Xiang Fu @xiangfu_
273 Followers 6K Following CSMS @Columbia | @ModulariumAI | Prev. @BULinguistics & @BU_CDS
Vitalii Kleshchevniko... @vitaliikl
2K Followers 1K Following Researcher @bayraktar_lab @StatGenomics @teichlab @sangerinstitute | Physics & AI to study cells, cell circuits & brains 🧠 | #SingleCell+spatial | 🌍🇺🇦to🇬🇧
zsy2001 @zsy20011206
0 Followers 9 Following
Princeton Center for ... @PrincetonCITP
6K Followers 490 Following Our researchers, fellows, academics and scholars study digital technologies with a focus on research, social engagement and training.
Fangming Xie @FangmingXie
60 Followers 742 Following
Daniel Chawla @daniel_chawla
5 Followers 61 Following
Sindhu Vangeti @sindhuvangeti
711 Followers 1K Following Trainee, Respiratory Viruses @ecdc. DARPA Riser '22. Interested in viruses, vaccines & immunity. Science communicator. She/Her. Opinions my own. RT≠endorsement.
Aksh @aksh389prad
16 Followers 577 Following
Whijae Roh @whijae
290 Followers 608 Following Computational Biologist #CancerGenomics #GenomicMedicine #AI
Califano Lab @califano_lab
497 Followers 366 Following This is Dr. Andrea Califano Lab official twitter account. We use systems biology principles to study cancer. We are at Columbia University.
Parv Tanwar @TanwarParv
140 Followers 1K Following PG @IITKgp 2024 , DTU 2020, Biotechnology Graduate, Researcher; Microalgae | Bioprocess | Downstream Hobbies- Photography, Reading, Chess...
Simons Searchlight @s_searchlight
2K Followers 3K Following Accelerating research by collecting data/biosamples from ppl w/rare #genetic causes of #autism & other neurodev dis. Researchers can get data: https://t.co/kokQ7uLYWd
Melissa Haendel @ontowonka
2K Followers 2K Following At the intersection of biology and everything else. #AttributionForAll. #UnitedAgainstHate #raredisease #FactsMatter, also at @[email protected]
Dmitri Petrov @PetrovADmitri
14K Followers 4K Following Evolutionary Biologist at Stanford. Rapid Evolution, Adaptation, and Genomics. Open Science advocate.
Qiwei Yu @QiweiYu2
507 Followers 716 Following PhD candidate @Princeton | Intern @FlatironInst | Statistical mechanics & theoretical biophysics | Previously @IBMResearch @PKU1898 @RiceNatSci
LucasHu @LucasHuUofT
98 Followers 1K Following PhD from @UofT with @garybader1 Gary Bader & @CNSB_OHSU Andrew Emili. Postdoctor at @Columbia with @califano_lab Andrea Califano. Stats, CS, Systems/Com Bio.
Ridip kumar Gogoi @RidipkumarGogoi
9 Followers 68 Following
Anshul Kundaje @anshulkundaje
32K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Lior Pachter @lpachter
73K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
Michael 英泉 Eisen @mbeisen
73K Followers 13K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/77P0LDe6VR.
Ewan Birney @ewanbirney
47K Followers 2K Following Deputy Director General of EMBL, Director of EMBL-EBI. I have an insatiable love of biology. @[email protected]. I also work with ONT, Dovetail + GeL.
Anne Carpenter, PhD @DrAnneCarpenter
23K Followers 2K Following Discovery in images. Enthralled by science. SAB Recursion, Quiver. Building SyzOnc. Opinions my own. https://t.co/Q7nekPJPBf
Manolis Kellis @manoliskellis
53K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Steven Salzberg 💙�... @StevenSalzberg1
19K Followers 257 Following Bloomberg Distinguished Professor of BME, CS, and Biostats at Johns Hopkins Univ., tennis player, https://t.co/xwqVB2TYkL, @stevensalzberg.bsky.social
Richard Sever @cshperspectives
20K Followers 1K Following Chief Science and Strategy Officer, openRxiv. bioRxiv & medRxiv Co-Founder
Jason H. Moore, PhD @moorejh
34K Followers 17K Following Chair, Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles. Informatician. Data scientist. AI. Atari enthusiast. FSU & UMich grad.
Michael Schatz @mike_schatz
16K Followers 1K Following Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University
Revathy Chottekalapan... @rev_gag
285 Followers 893 Following Coorg-CoffeeTea-IPA-Bourbon-Kale-Yoga-Neuroscience-Birder @WeillCornell was @RockefellerUniv, @UniKoeln, @MaxPlanck, @NCBS_Bangalore. Views my own
Pawel F. Przytycki @PFPrzytycki
142 Followers 79 Following Assistant Professor, Faculty of Computing & Data Sciences, Boston University
Kathy Chen @kathyxchen
187 Followers 367 Following AI for science with @zhou_jian at @uchicagomed Formerly @TroyanskayaLab (@FlatironInst, @Princeton), @hackNY '16
Christine Horejs @ChristineHorejs
3K Followers 2K Following Chief editor of @natrevbioeng, former chief editor of @NatRevMater. Things are only impossible until they are not (Picard)
Lappalainen Lab @tuuliel_lab
5K Followers 577 Following Functional human genomics @ KTH, SciLifeLab, NY Genome Center. Pro science here, more fun stuff fun at @tuuliel. Mastodon [email protected]
Alexis Battle @alexisjbattle
5K Followers 431 Following Professor of Biomedical Engineering at JHU. Director, Malone Center for Engineering Healthcare. Interim co-director, Data Science and AI Inst. ML/AI, genomics
Yuri Pritykin @YuriPritykin
896 Followers 432 Following Assistant Professor @Princeton Lewis-Sigler Institute for Integrative Genomics (https://t.co/KhwYMNwZKd) and @PrincetonCS
Kiley Graim @KileyGraim
54 Followers 59 Following
Princeton SML @PrincetonSML
966 Followers 170 Following Princeton University Center for Statistics and Machine Learning
NatRevMaterials @NatRevMater
13K Followers 417 Following Tweets from the editors of Nature Reviews Materials, Giulia Pacchioni, Ariane Vartanian & Charlotte Allard. Now also on Bluesky 🦋 @natrevmater.bsky.social
Vicky Yao @vyao
262 Followers 151 Following assistant prof of CS @RiceUniversity computational biology, disease genomics, data visualization https://t.co/rrmgfgO9DC
Abhijit (Jeet) Naik @minimalchange
179 Followers 375 Following Physician-Scientist at large @UMich, Informatician, always in flux regardless of pore size. Tweets are my own views and not medical opinion.
Simons Foundation @SimonsFdn
22K Followers 331 Following Advancing the frontiers of basic science through grantmaking, research and public engagement. Sign up for our newsletter: https://t.co/s7KhKAFrjE
Mark Gerstein @MarkGerstein
8K Followers 889 Following #Bioinformatics professor, interested in #DataScience, with photography, triathlons & books as hobbies
Orli Bahcall @obahcall
8K Followers 2K Following Editor-in-Chief @CellGenomics. Formerly Senior Editor @Nature for Genetics & Genomics, @NatureGenet @NatureRevGenet. Open science, transparency, open access.
Wyatt Clark @wtclark
88 Followers 469 Following
Anthony Gitter @anthonygitter
3K Followers 425 Following Computational biologist; Professor at University of Wisconsin-Madison; Jeanne M. Rowe Chair at Morgridge Institute
Flatiron Institute @FlatironInst
7K Followers 258 Following Advancing scientific research through computational methods and software tools. Centers: #FlatironCCA, #FlatironCCB, #FlatironCCM, #FlatironCCN and #FlatironCCQ
wormbase @wormbase
3K Followers 153 Following WormBase is an NHGRI (US) and MRC/BBSRC (UK) funded project supporting scientists using C. elegans as a model system.
Titus Brown @ctitusbrown
10K Followers 815 Following I am not a deep man, but I have many shallows. I aspire to be a pro-community culture hacker. https://t.co/rC4xLPWd8O…. mastodon: @[email protected]. He/him.
Spectrum (Autism Rese... @Spectrum
31K Followers 1K Following Spectrum from The Transmitter. Forging collaborations that deepen our understanding of autism. Subscribe to the newsletter: https://t.co/k76odTz6ae
Isaac Kohane @zakkohane
12K Followers 914 Following Computer science + Biomedicine = Medicine as a Knowledge Processing Discipline @harvardMED @HarvardDBMI Prof/Dept Chair https://t.co/6qcUd2RfDs MD/PhD @NEJM AI EIC
Daniel MacArthur @dgmacarthur
39K Followers 2K Following Genomics, big data, open science. Director, Centre for Population Genomics at @GarvanInstitute + @MCRI_for_kids. Opinions my own.
Jian Zhou @zhou_jian
2K Followers 682 Following Understanding the genomic sequences with ML and AI. UChicago professor. https://t.co/zOCzsCkx3R
Broad Institute @broadinstitute
100K Followers 3K Following A multidisciplinary community of researchers on a mission to improve human health.
Olga Troyanskaya @OlgaTroyanskaya
4K Followers 378 Following AI in biomedicine researcher, Computer Scientist; Director, @PrincetonPPH, Professor @PrincetonUniversity & Deputy Director for Genomics @FlatironInst
HumanBase @HumanBaseFI
38 Followers 26 Following A web portal for data-driven predictions of gene expression, function, regulation, and interactions in human. Developed at @FlatironInst, @FlatironCCB.
Princeton Computer Sc... @PrincetonCS
7K Followers 220 Following The Department of Computer Science at Princeton University
Tuuli Lappalainen @tuuliel
29K Followers 706 Following Professor in genomics at KTH, SciLifeLab, NY Genome Center. Popular science etc. here, hard core science at @tuuliel_lab. Also at @tuuliel.bsky.social
Adam Siepel @asiepel
4K Followers 415 Following Computational biologist at Cold Spring Harbor Lab. Evolutionary geneticist. Reformed computer scientist. Sometimes writer. Lapsed programmer. Dad.
Robert West, PhD ✝�... @westr
19K Followers 10K Following @SUNY Emeritus via @Harvard @ucdavis. #PersonalizedMedicine AI and 🧬 of Disease. Pic: St. Marks, FL
23andMe @23andMe
86K Followers 6K Following A nonprofit affiliate of the 23andMe Research Institute, a 501(c)(3) medical research organization for public good.
GenomeWeb Daily Scan @DailyScan
16K Followers 266 Following GenomeWeb blog covering editors' picks of what's worth reading on the Web.
george church @geochurch
83K Followers 22 Following Professor @Harvard @MIT @PGorg @WyssInstitute tech dev: #CRISPR #NGS #BRAINiYou might like
