Dessimoz Lab @DessimozLab
At the interface between biology and computer science, we seek to better understand evolutionary and functional relationships between genes, genomes & species. lab.dessimoz.org Lausanne, Switzerland Joined October 2013-
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FastOMA is out now in Nature Methods 🎉: nature.com/articles/s4159… A new orthology inference algorithm that scales linearly and is highly accurate. FastOMA can process all >2000 eukaryotic UniProt ref proteomes <24 hours 🚀. Try it out at github.com/DessimozLab/fa…
From @SinaMajidian, @DessimozLab and colleagues, FastOMA achieves fast and accurate orthology inference, with linear scalability. nature.com/articles/s4159…
OMAnnotator: a novel approach to building an annotated consensus genome sequence doi.org/10.1101/2024.1… Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021.1…
In this exciting new preprint, Warwick Vesztrocy et al use Bgee to show that "the most diverged orthologues display the greatest change in gene expression, thus suggesting that they have a greater functional divergence" biorxiv.org/content/10.110…
Exploring gene duplications! Our study reveals how duplicated genes diverge in function using structural and expression analysis across 36 species. Check out our paper: biorxiv.org/content/10.110… Thanks to @the_alexwv, @Gloveface, Paul Thomas, @cdessimoz #Genomics #Evolution
Session 24: OMA/OMArk is starting now! To join in the session, jump over to our discord at: discord.gg/gF73fCF4 Or you can join in on the YouTube stream at: youtube.com/@thebiodiversi… @SinaMajidian @OMABrowser
Learn more in this blog post by Charles Bernard, first author of the work: lab.dessimoz.org/blog/2024/08/3… And link to the preprint of course: biorxiv.org/content/10.110…
EdgeHOG is now available on GitHub github.com/DessimozLab/ed…. Whether you’re working with a small clade or a large phylogeny, you can now perform ancestral gene order inference with ease. Try it out and let us know how it goes. #OpenScience #GitHub
For evolutionary biologists interested in tracing genomes back to their ancient ancestors, we’ve developed EdgeHOG—a tool that reconstructs ancestral gene orders at an unprecedented scale and speed. #Genomics #EvolutionaryBiology #EdgeHOG Thread!
Many interesting discussions at the #ISMB2024 poster sessions. Thanks to everyone who stopped by our poster and to #ISCB and @DessimozLab for the opportunity!
Ending #ISMB2024 with our poster session. @silviaprietob @DessimozLab #genes #Evolution
With a nice photo of lab alumnus @leomrtns !
We made it! The final stop of @BioFAIRUK Roadshow. Lots of people to thank: -Those who has took the time to join us in Norwich -Our amazing speakers @irenepapatheodo @_EllenBell @DipaliD4 -Our fantastic colleagues @EarlhamInst for making the event run smoothly. #FAIR #DataSharing
nature.com/articles/s4155… Have a look at the article I reposted by @BallouxFrancois, @cedriccstan and @LucyvanDorp if you're interested in viruses and their evolutionary signature when jump hosts. I had the pleasure of writing a news and views piece about this work with @cdessimoz
Quality assessment of gene repertoire annotations with OMArk go.nature.com/4bH5OaF
📢 Glad to share our piece 'AI and the democratization of knowledge' @ScientificData. Data is the new oil—ripe for reuse. But what does it take to reuse? it's about making data interpretable by all, including AI, the ultimate non-specialist! #OpenScience nature.com/articles/s4159…
📢CALL FOR ABSTRACTS📢 🌟Abstract submission is now open for the Quest for Orthologs meeting #QFO8 which will be held at the University of Quebec in Montreal, Canada on July 17-18! More info at event.fourwaves.com/qfo8 Deadline: April 26.
How to evaluate the quality of a genome annotation? Introducing #OMArk, a groundbreaking tool by SIB’s @Why_Nevers & @Dessimozlab and part of the SIB Resource #SwissOrthology, now featured in @NatureBiotech: nature.com/articles/s4158…
Our OMArk paper is finally out at @NatureBiotech! I am excited to share the final results of our work with @Gloveface @cdessimoz @VictorRossier @DessimozLab. OMArk is a one-stop shop for eukaryotic genome annotation assessment. Link : nature.com/articles/s4158… (🧵)
Rosa Fernández @Rosamygale
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Christophe Dessimoz @cdessimoz
2K Followers 819 Following Director of the SIB Swiss Institute of Bioinformatics (@ISBSIB) and Prof at Uni of Lausanne (@DBC_UNIL @DessimozLab). Follow me https://t.co/2Ia2DLjWxb
Pedro Beltrao @pedrobeltrao
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Rob Waterhouse also @... @rmwaterhouse
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Ewan Birney @ewanbirney
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SIB @ISBSIB
8K Followers 803 Following The SIB Swiss Institute of Bioinformatics is an internationally recognized non-profit organization, dedicated to biological and biomedical data science.
Iñaki Ruiz-Trillo @multicellgenome
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Sasha Bradshaw @SBradshaw26
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OMA Database @OMABrowser
230 Followers 47 Following Orthologs among 2000+ complete genomes across all of life. Follow us to stay informed of new releases and features. We welcome feedback and suggestions!
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Justice T. NGOM 🧬�... @TresorNgom
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Bgee database @Bgeedb
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The Biodiversity Geno... @TheBGAcademy
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David Michael Sidhu @DavidMSidhu
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Jonathan Haars @JonathanHaars
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Judith Mank @judithmank
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Adam Vivian-Smith �... @phylogenypluckr
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Joshua Cooper @jthomascooper
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Zachary Ardern 🧬 @zachary_ardern
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Peter McKeown @Peter_C_McKeown
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Israt Jahan @_isratjahan
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Q @Qhlwgc
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Andrew Swafford @Swafford_AJ
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Selene FeRNAndez @SelFdz
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Y. Andrew @yufan_andrew
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Christophe Dessimoz @cdessimoz
2K Followers 819 Following Director of the SIB Swiss Institute of Bioinformatics (@ISBSIB) and Prof at Uni of Lausanne (@DBC_UNIL @DessimozLab). Follow me https://t.co/2Ia2DLjWxb
European Reference Ge... @erga_biodiv
3K Followers 908 Following Biodiversity Genomics Community to generate reference quality genomes for all European species. https://t.co/jzc6OWEAkg
OMA Database @OMABrowser
230 Followers 47 Following Orthologs among 2000+ complete genomes across all of life. Follow us to stay informed of new releases and features. We welcome feedback and suggestions!
Judith Mank @judithmank
2K Followers 458 Following 🧬Professor of Evol Genomics at UBC Zoology. Editor in chief of @EvolLetters. Science with a sprinkling of dachshund pictures. Posting as judithmank on 🦋.
Irene Julca @IreneJulca
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Stefano Pascarelli @Pahskahrailly
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Dave Moi @steg0s4urus
246 Followers 338 Following 🔬 Postdoctoral Researcher working at the @dbc_unil for the @DessimozLab | Bridging Borders | #Bioinformatics & #MachineLearning 🤖 |
Silvia Prieto Baños ... @silviaprietob
151 Followers 395 Following PhD student @DessimozLab @unil_qb | MSci graduate @UoABioSci 🇪🇸🇨🇭🏴. Moving to 🦋
Alina Nicheperovich @alnnch
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Sina Majidian @SinaMajidian
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Natalia Zajac @NataliaZajac14
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MattHannah @_Matt_Hannah
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Dept of Computational... @dbc_unil
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Rossier Victor @VictorRossier
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The London NERC DTP @London_NERC_DTP
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Leonardo Martins @leomrtns
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LERN @LondonEvolution
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