Biopython Project @Biopython
Open-source bioinformatics libraries in Python biopython.org Worldwide Joined March 2009-
Tweets837
-
Followers4K
-
Following47
-
Likes20
We don't have a dedicated Mastodon account, for now keep an eye on genomic.social/@OpenBio and #Biopython
We're following the OBF lead and not using Twitter anymore, see open-bio.org/2023/11/20/lea… And Biopython 1.82 has just been released, see open-bio.org/2023/12/22/bio…
Way overdue, but Biopython 1.80 is out pypi.org/project/biopyt… - expect formal announcement later mailman.open-bio.org/pipermail/biop… - conda packages soon too! Thank you to all the contributors /Peter
@webflags1 @NCBI Sounds like a planned change - and quite likely the NCBI did make an announcement somewhere (I’m not familiar with that particular DB) /Peter
@webflags1 @NCBI You’ll have to ask the NCBI - I’d suggest sharing the URL itself, the handle from Bio.Entrez has a .url attribute you can look at. You can also try debugging the URL in your browser (e.g. try other format/mode combinations). /Peter
Just ordered a pair of free 2FA keys courtesy Google Open Source Security Team for use with PyPI where a few of my projects are now deemed “critical” (plus @Biopython) pypi.org/security-key-g…
55 lines of #Python code to build a Multiple Sequence Alignment viewer for the terminal with the #Rich library (from @textualizeio) #bioinformatics
@NEdgingtonPhD We’re deprecating the older Bio.pairwise2 in the next release.
@pjacock @tomeraltman Logged as github.com/biopython/biop…
@chasewnelson @ThePSF Not really a Biopython thing, does feel like something the #Python #Pandas community could help with though? /Peter
@NWaglechner @kaiblin This was due to a change in GenBank files without an actual sequence are represented as of Biopython 1.79, see also deprecation of the UnknownSeq object open-bio.org/2021/06/03/bio… /Peter
@KarenFlemingPhD Yes please - pull request via the “Edit on GitHub” link top left of that page would be most welcome. /Peter
@mglerner @KarenFlemingPhD @Python Commit github.com/biopython/biop… should fix the doctest formatting on biopython.org/docs/dev/api/B… (next time the HTML gets updated). If you spot anymore, please open an issue. Thanks /Peter
#Biopython can handle #snapgene file! Using this feature, it's possible to easily convert many snapgene files into #genbank format files!!
NumPy has dropped Python 3.6 support, Biopython plans to soon. Any objections? github.com/biopython/biop… mailman.open-bio.org/pipermail/biop…
Our #Python bug hunt in popular, well-maintained projects (@TensorFlow, numpy, salt, sentry and @Biopython) turned up interesting stuff like undefined var reference, unreachable code, and more. blog.sonarsource.com/sonarcloud-fin…
@BioIsaac6716 @numpy_team @ProjectJupyter No, you need to star them on GitHub too ;) More seriously, have a look at the issue trackers for beginner or newcomer friendly issues if you want to contribute directly. /Peter
@EstadoAlternado @poikahmusica Glad you solved it. Yes, KeyError is expected when the key isn’t in the dictionary.
Very happy to have my first contribution to @Biopython merged today! Hope to contribute more in the future. Shoutout to @pjacock for the patience in reviewing my PR. #opensource #python #bioinformatics
Jason "boundless deli... @JasonWilliamsNY
6K Followers 4K Following Asst. Dir. @DNALC @CSHL/ @CyVerseOrg /@thecarpentries/#AreciboC3/ #Foodie #ClassicalMusic #StarTrek /lifescitrainers.org —my own opinions.
Torsten Seemann @torstenseemann
17K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
James McInerney @jomcinerney
11K Followers 9K Following Chair in Evolutionary Biology and Head of Department. Open Science Advocate. Emigrant. #Python Machine learning. #Pangenomes 🇮🇪 #firstgen He/Him
Chinmay R Raj @ChinmayRRaj
0 Followers 18 Following Student, Integrated https://t.co/GZy23RfOy3. Bioinformatics & Molecular Biotechnology, RV University."
OmniBioAI @OmniBioAI
0 Followers 11 Following AI-native bioinformatics operating system 🧬 28+ microservices · 225+ plugins · 1,025 containers · 36M+ PubMed abstracts
王様の耳はロバ... @robarobberlover
39 Followers 710 Following
Sujal Damor @SujalDamor17
1 Followers 37 Following
Marc Andrés @marcandres17
50 Followers 403 Following Del poble més endeutat d'Espanya des del 2000. Biòleg/Bioinformàtic/Profe/Graduat en tindre dolor crònic de muscle. Si vens a stalkejar poca cosa trobaràs
Jonathan Machado @j_machadot
22 Followers 696 Following
Rutvik Makwana @rutvik_
876 Followers 242 Following Just posting my thoughts on random things, prev @xai
Dhruba Konwar @dhrubakonwa
1 Followers 24 Following
Atiq Sahil @DrAtiqSahil4
1 Followers 30 Following i ɗѳɳ't ɳɛɛɗ yѳuʀ ѳpiɳiѳɳ ɓɛcɑuรɛ ɱy ɱiʀʀѳʀ รɑyร ❤
Debkaantt Baidya @debkaantt48660
0 Followers 2 Following
Annabelle @Annabel98214295
65 Followers 1K Following Scientist and plant lover. Interested in Public Health. Interested to connect with scientists & public health professionals
GPTomics @gptomics
68 Followers 84 Following Research at the intersection of biology and artificial intelligence.
dough though @domenjemec
28 Followers 303 Following Bio, ML, building fun things. | Founder @gptomics Opinions expressed are my own.
𝓛𝓪𝓭𝔂𝓓�... @DBug0o
561 Followers 850 Following 👽 𝔼X𝕥𝕣𝕒𝕥𝕖𝕣𝕣𝕖𝕤𝕥𝕣𝕖 𝕒𝕤𝕤𝕦𝕞𝕖𝕖 | ℂ𝕠𝕕𝕖𝕦𝕤𝕖 𝔸𝕟𝕕𝕣𝕠𝕚𝕕 & 𝕀𝔸 | ℙ𝕙𝕚𝕝𝕠𝕤𝕠𝕡𝕙𝕖 𝕔𝕠𝕤𝕞𝕚𝕢𝕦𝕖 🌌 | 𝔸𝕣𝕥𝕚𝕤𝕥𝕖 & ℝ𝕖𝕧𝕖𝕦𝕤𝕖
Angélica Álvarez @neurangel_
10 Followers 128 Following Neurocientífica | Ingeniera de datos. AI/ML para drug discovery e investigación biomédica @uarizona
Souvik @iamsouvikbhunia
82 Followers 269 Following Biotech professional | Microbiologist | Researcher | BioIT Enthusiast | AI Enthusiast | Building Circular economy, Sustainable bioproduct!
World Citizen @Humanitas42
262 Followers 1K Following It's all good in the end and if it's not good, it's not the end.
Anders Hellström @AHellstrom_com
66 Followers 1K Following #Kantian #Anarchist #ProVaxxer #HighIQ This is my only X account(https://t.co/A383g5QlMt). https://t.co/h9SpLW6p3S https://t.co/Tmr44YyFF7
archita patra @PatraArchita
45 Followers 618 Following
Ali Chenari Bouket @chenari_bouket
13 Followers 59 Following Assistant Prof. in Plant Pathology Iranian Research Plant Protection Institute AREEO East Azarbaijan Iran
bl @xbodus
0 Followers 188 Following
Mohamad_Ayman @Mohamad_sonic
2 Followers 345 Following
Vyshnavi Mane @ma54915
0 Followers 53 Following
Nikki @byrudra0812
0 Followers 7 Following
Wybthon @Wybthon
112 Followers 122 Following Build interactive web apps in Python. No JavaScript required.
sarah @whatsaradoing
0 Followers 19 Following
saviour @SaviourAtuheire
579 Followers 3K Following Biotechnologist :Quality management systems and molecular diagnostics. Technology enthusiast:AI, VR, AR and synthetic biology, Founder @safeaiafrica
Jaume Alcazo Castella... @JaumeAlcazo
114 Followers 2K Following Developer of Morgana dungeon crawler (currently on hyatus) (https://t.co/RP4EdscRpl) [email protected]
Jerry Abena @abena63790
18 Followers 528 Following Take my intellect and use every power as thou shalt choose.
Maru Cardillo @marucardillo
80 Followers 313 Following PhD Student @intaargentina | Bióloga @Exactas_UBA 🌱🐄
Fate @alltheputs
2K Followers 864 Following Empirical observations, only. Non-obvious patterns decoded.
highonhues @highonhues
25 Followers 283 Following bio, tech, automations and visualisations. a forever learner.
Steve Baeyen @biobits_steve
0 Followers 66 Following bio-informatician @ Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)
Kaz. Hammarwalker @KazuhiroHamaoka
138 Followers 324 Following HU Fermentation tech.🍺🍶🦠→EU CMES🦠🌊→UY IEV🍷🦠🍇→NIG🧬🖥️📚/LiD(APD)/下り坂42
chengjilai @chengjilai
26 Followers 2K Following
Mualusi Ramalata @MualusiRam24412
2 Followers 251 Following
Sraya @raphz240
0 Followers 13 Following
NCBI @NCBI
74K Followers 82 Following Official account of the National Center for Biotechnology Information at @NLM_NIH. Privacy: https://t.co/HCI6YakCFK | Website help: [email protected]
Vini Salazar @vinisalazar_
552 Followers 2K Following marine microbiology | research software | he/him/ele | tweets in 🇦🇺🇧🇷
João Vitor Cavalcant... @jvcavv
67 Followers 190 Following Science should be emboldening and freeing | Linked data & free knowledge @wikidata | #python | #rstats | Transcriptomics & Systems Biology @bioinfo_UFRN
Anıl Tuncel @AnilBey
374 Followers 1K Following Personal account https://t.co/QnNGyHE3Nv Software Engineer Python Software Foundation Contributing Member
Jerome Kelleher @jeromekelleher
2K Followers 472 Following Research group leader at the Oxford Big Data Institute. Lead developer on tskit/msprime/tsinfer. He/him. 🇮🇪 @[email protected]
Podcast.__init__ @Podcast__init__
10K Followers 9 Following A podcast about Python and the people who make it great. Hosted by @TobiasMacey [email protected]
Taylor Paisie 🇺�... @tpaisie
323 Followers 780 Following I mess around with pathogenic bacteria, viruses, and computers. Aspiring Jedi scientist 🤺 ⭐![PhD student at [#LCSB* #Schneider_lab* @uni_lu]🐍👨🏻💻](https://pbs.twimg.com/profile_images/1538612103749242882/1KKOpt5B.jpg)
Ahmed Hemedan @ahmed7emedan
123 Followers 1K Following PhD student at [#LCSB* #Schneider_lab* @uni_lu]🐍👨🏻💻
Joshua Box @DrJoshuaBox
700 Followers 1K Following ML for bio and drug discovery. Recovering chemoinf. Occassionally FulhamFC and London. Views my own. Now @drjoshuabox.bsky.social
Open Source Initiativ... @OpenSourceOrg
65K Followers 249 Following Global non-profit: promotes and protects Open Source software, development & communities through education and advocacy. Yes, we coined the term!
Marco Galardini @mgalactus
1K Followers 1K Following Lurking account, posting has moved to pastures bluer
Christian Brueffer @cbrueffer
628 Followers 3K Following Freelance #bioinformatics and #datascience consultant @InSilicoCons • 🇸🇪 🇩🇪 • bits, bytes, and nucleotides Account private due to the many spam followers.
Python Status @PythonStatus
2K Followers 0 Following
Greg Caporaso @gregcaporaso
3K Followers 668 Following
Matthew Wakefield @genomematt
2K Followers 2K Following Ovarian cancer researcher @wehi_research and @unimelb @thewomens Knowledge leaks through the gaps between disciplines. He/Him @[email protected]
Carlos Peña @carlosp420
296 Followers 470 Following
Tiago Antao⚡ @tiagoantao
314 Followers 1 Following
Anthony Mathelier @AMathelier
2K Followers 639 Following Computational biologist interested in gene expression regulation. Associate Director and Group Leader @NCMMnews. Follow me at @amathelier.bsky.social
I’m not here often @widdowquinn
2K Followers 2K Following @[email protected] Computational biologist. Views/opinions mine, not my employer's. Retweet != agreement. Not green, just pleasant. Fabian. =﹥÷
Travis Oliphant @teoliphant
35K Followers 819 Following Creator of SciPy, NumPy, and Numba; founder of Anaconda, Inc and NumFOCUS. CEO of Quansight, OpenTeams, and OpenTeams Global, Head of Product at Zyphra
Phylo Summer of Code @PhyloSoC
94 Followers 0 Following The Phyloinformatics Google Summer of Code is the participation of the National Evolutionary Synthesis Center (NESCent) in the Google Summer of Code program.
Jason Stajich @hyphaltip
8K Followers 7K Following I study evolution of fungi using genomics @stajichlab. Professor at UC Riverside. Comments & opinions shared are mine. He/him
Hilmar Lapp @hlapp
840 Followers 529 Following Open source, data, science enthusiast. I like free, as in speech, not beer. And cappuccino. And the South. My opinions are mine alone.
Kai Blin @kaiblin
1K Followers 456 Following Microbiology PhD, co-author of antiSMASH, Open Source geek, views are my own. @[email protected]
Peter Cock @pjacock
4K Followers 745 Following Bioinformatician at @HuttonICS, one of developers on @Biopython; @OBF_news president. Tweets are my own. He/him/his https://t.co/ODTvOjGtDb
Eric Talevich @etalevich
323 Followers 293 Following
Iddo Friedberg 💔�... @iddux
4K Followers 2K Following Now at https://t.co/WVNf5mwt0e Curses back at dimensionality. High throughput, some output. Data Fertilizer. Marathoner. Typos. Unfunny.
Wibowo Arindrarto @_bow_
195 Followers 44 Following
Brad Chapman @chapmanb
3K Followers 596 Following Biologist and programmer @chapmanb.bsky.social @[email protected]
Planet Python @planetpython
17K Followers 0 Following Created by Marco Rodrigues @gothicx and managed by Tim Golden @tjguk.
Travis CI @travisci
24K Followers 145 Following Hi! We're Travis CI, for support-related items, contact us at [email protected] or head to the Travis CI Community Forum at https://t.co/u3II2P3drn.
BOSC @OBF_BOSC
2K Followers 143 Following Bioinformatics Open Source Conference yearly since 2000. BOSC 2024: July 15-16, Montréal https://t.co/fUG58Gugyq https://t.co/X8BYR4Elj7
The PyPy Project @pypyproject
8K Followers 58 Following The developers of the PyPy project: a fast, compliant Python interpreter.
NESCent @NESCent
2K Followers 504 Following NSF-funded science nonprofit dedicated to cross-disciplinary research in evolution. Jointly operated by Duke, UNC, and NC State. Tweets by Nicole Duncan.
GitHub @github
2.7M Followers 333 Following The AI-powered developer platform to build, scale, and deliver secure software.
Python Software Found... @ThePSF
692K Followers 126 Following The nonprofit organization behind the Python programming language. For help with Python code: https://t.co/XDHPttz2Xv On Mastodon: @[email protected]
Guido van Rossum @gvanrossum
308K Followers 480 Following Python's BDFL-emeritus, Computer History Fellow. Opinions are my own. He/him.
OBF News @obf_news
2K Followers 68 Following Open Bioinformatics Foundation, non-profit volunteer-run org supporting #OpenSource #Bioinformatics & @OBF_BOSC https://t.co/qdmTkNOpyU
You might like
