Johannes C. Paetzold @jocpae
ml research in biology and medicine | Imperial College London | Helmholtz Zentrum München London, England Joined February 2020-
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Very excited to share that our DELiVR method is now open access published @naturemethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s4159… by @Dorie00 @Rami96614090 @moritz_negwer
Very excited to see our work wildDISCO at the cover of Nature Biotechnology nature.com/articles/s4158…
Very excited to see our work wildDISCO at the cover of Nature Biotechnology nature.com/articles/s4158…
Super thrilled to share our latest work, AlphaGeometry from @GoogleDeepMind , the first AI system ever approaching the IMO gold medalists in solving Olympiad geometry math problems. Published today at Nature, titled “Solving olympiad geometry without human demonstrations”, our…
🔬🌟 Join our Innovative Team at @HelmholtzMunich! We're excited to announce an opening for a Staff Scientist in Tissue Clearing & Image Analysis at our lab. Be part of a team that's pushing boundaries in bioengineering, AI, and more! We are at the forefront of combining…
HyperProbe presents @DanielRueckert and @i_ezho from the Technical University of Munich, @TU_Muenchen, responsible for identifying maschine learning algorithms to identify biomarks of brain activity.
Great jobben the challenge! 😊
Great jobben the challenge! 😊
@jocpae speaking on topology aware segmentation in the topology driven image analysis tutorial at #MICCAI2023
Please join our MICCAI'23 tutorial: "Topology-Driven Image Analysis". We cover recent advances in image analysis from the topological perspective! Speakers @ChaoChenSBU BjoernMenze @hxlhuxiaoling @jocpae @SaumyaGupta26 topology-miccai.github.io #MICCAI2023 #topology #tutorial
VR/AR for Biomedical Image Analysis & Clinical Neurosciences 🧠 tutorial at #ICCV2023 📸. Get ready for a hands-on VR/AR session with lots of #clinical & #neuroscience data. 16:00! in Room W08 🔗 Zoom link available at: xr4biomed.github.io #VR #AR #BiomedicalImaging 🌍🔬
It’s like Google Maps, but for mouse bodies. snexplores.org/article/transp…
Beyond happy to be part of this study @erturklab @ilginkolabas @HelmholtzMunich
Beyond happy to be part of this study @erturklab @ilginkolabas @HelmholtzMunich
TopCoW challenge happening at MICCAI 2023! First public challenge on Circle of Willis (CoW) vessel segmentation on two common angiographic imaging modalities MRA and CTA! We look forward to your registration at topcow23.grand-challenge.org Submission is until mid-late Sep. 🐮
We are thrilled to present our new study unlocking precision in nanoparticles. Cell-level resolution imaging is key in targeted nanoparticle development. See our work on DNA Origami🧬: biorxiv.org/content/10.110… by @MolbayM, @shan_heather, Benni Kick et al, with @hendrik_dietz.🧵👇🏼
Great challenge for topology aware segmentation of the brain vasculature
@HelmholtzMunich @LMU_Muenchen @DeepPiction @TumTransla @imperialcollege @SyNergy_Cluster @erturklab @HongchengM @jieluo692 Transparent mouse could improve cancer drug tests #NBTintheNews via @BBCScienceNews bbc.com/news/science-e…
Ali Max Erturk @erturklab
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628 Followers 116 Following Assistant Prof & Principal Investigator @ Technical University of Munich/ Helmholtz Munich. Ex Imperial College London. Privacy-preserving AI & AI in Medicine.Machine Learning for .. @MELBAJournal
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35 Followers 56 FollowingAli Max Erturk @erturklab
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515 Followers 862 Following Neuroscience fans. Associate professor in SUN YAT-SEN UNIVERSITY. Doctoral students advisor. Previous lab member in Helmholtz Munich center ITERM.Matthias Mann Lab @labs_mann
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377 Followers 417 Following 🇨🇳🇮🇹🇩🇪🇺🇸 Postdoc in Neurosc. Tessier-Lavigne lab. Tissue clearing|light-sheet microscopy|neuronal plasticity|neuronal degeneration. Tweets are mine#3D Brain Analysis with #AI A team at #HelmholtzMunich @erturklab & @LMU_Uniklinikum developed #DELiVR. 🚀Fostering #PrecisionMedicine, e.g. for #Cancer-related weight loss. 👉Read more in our news: t1p.de/smjnn and in @naturemethods 👇
The DELiVR pipeline enables deep learning-based analysis of neuronal activity or other processes in the brain after tissue clearing and light-sheet imaging. DELiVR’s virtual reality approach facilitates the generation of training data for deep learning. nature.com/articles/s4159…
Discover the story behind DELiVR, our VR-empowered deep learning pipeline! Our research briefing not only summarizes the paper, but also unveils the creative journey. Access it freely here: rdcu.be/dFw3g @Rami96614090 @moritz_negwer @jocpae @BerrielDiaz @erturklab
The DELiVR pipeline enables deep learning-based analysis of neuronal activity or other processes in the brain after tissue clearing and light-sheet imaging. DELiVR’s virtual reality approach facilitates the generation of training data for deep learning. nature.com/articles/s4159…
Academia is deeply broken, so I don't blame them. But I just know in a better world they could be sharing their hard-won knowledge with the next generation instead of forgetting it all to go chase the money.
I have no wish to leave this valley of tears today, but if that happens, let it be known that I was a honest scientist. In >40 years of science, I have been wrong, sloppy, lazy, insufficiently vigilant/competent, and much more - but I was never dishonest.
Enjoyed a nice (but cold) evening on a rooftop in mid-town yesterday with this amazing bunch. So luck to have them as colleagues.
For a quick summary, read the Research Briefing, here: nature.com/articles/s4159… @Dorie00
@kivancgorgulu @erturklab @BerrielDiaz @Rami96614090 @moritz_negwer Thanks a lot 😊
21/n Work done at @HelmholtzMunich, @LMU_Uniklinikum, @ISD_Research, @TU_Muenchen, @LMU_Muenchen, @kocuniversity and supported by @ERC_Research, and amazing @syGlassVR software.
20/n This was a team effort! We couldn't have done it without @Lu_h99 @neuronflow @shan_heather @MihailMuc @zhouyi_rong @jocpae Benedikt Wiestler @MariePiraud @DanielRueckert @JuliaZuber08 @MorignyPauline @RohmMaria @menze_group Stephan Herzig @BerrielDiaz
Very excited to share that our DELiVR method is now open access published @naturemethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s4159… by @Dorie00 @Rami96614090 @moritz_negwer
Try it! github.com/erturklab/deli…
#3D Brain Analysis with #AI A team at #HelmholtzMunich & @LMU_Uniklinikum developed #DELiVR. The #DeepLearning tool allows #brain cell mapping without coding expertise. 🚀Fostering #PrecisionMedicine, e.g. for #Cancer-related weight loss. 👉t1p.de/smjnn
Our latest work is on the cover of Nature Biotechnology <3 !
The April issue is live nature.com/nbt/volumes/42… Our cover shows an image of a whole mouse body with depth color-coding of a neuronal marker. Mai et al. present wildDISCO, a method for whole-body imaging compatible with standard IgG antibody labeling go.nature.com/3PXs1Zw
I’m on a train from Stuttgart to Paris for the thesis defense of @MathisPetrovich. Having lived most of my life in the US, I’m always amazed that I can get on a train and be in Paris in three hours. Paris! By train! What a life.
Congratulations Marvin @marvinchth!
Congratulations on your #PhD. Good luck for your further research and future projects. @marvinchth @labs_mann
Congratulations @FCBayern. I am especially delighted for Thomas Tuchel, who, with clever tactics, has led the team to the Champions League semi-finals. The title is now within reach!
#wildDISCO on the cover @NatureBiotech! 👉Watch #HelmholtzMunich expert Prof. Ali Ertürk @erturklab fascinating explanation of wildDISCO 📽️t1p.de/0q587 👉Read about "Visualizing Whole Bodies in Unprecedented Detail" 🗞️ t1p.de/oldmb
The April issue is live nature.com/nbt/volumes/42… Our cover shows an image of a whole mouse body with depth color-coding of a neuronal marker. Mai et al. present wildDISCO, a method for whole-body imaging compatible with standard IgG antibody labeling go.nature.com/3PXs1Zw
Very excited to see our work wildDISCO at the cover of Nature Biotechnology nature.com/articles/s4158…
The April issue is live nature.com/nbt/volumes/42… Our cover shows an image of a whole mouse body with depth color-coding of a neuronal marker. Mai et al. present wildDISCO, a method for whole-body imaging compatible with standard IgG antibody labeling go.nature.com/3PXs1Zw
GR plant 2 neue große Meeres-Schutzgebiete: im Ionischen Meer & in der Ägäis. Schleppnetz-Fischerei soll dort bis 2030 verboten werden. @WWFGreece u andere NGOs fordern dort u.a. auch Verbot von Öl- u Gasbohrungen. Ein Thema auf der @OurOceanGreece -Konferenz ab Montag in Athen
Happy to be co-organizing the ISLES 2024🆕challenge! Feels like tackling the ischemic stroke lesion segmentation challenge? Come join us at ISLES! 👉Check out our website to learn more about this edition: isles-24.grand-challenge.org
Welcome to Morocco, ISLES community! 🌍 We're thrilled to announce that the ISLES challenge is back at #MICCAI for an exciting competition. #ISLES24 #MedicalImaging #AI #Stroke #computervision #deeplearning (1/2)