Carsen Stringer @[email protected] @computingnature
group leader @HHMIJanelia | diversity + open-science for better science | she/her | VOTE BLUE Mostly on MASTODON: @[email protected], join us! mouseland.github.io Ashburn, VA Joined June 2016-
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Carsen Stringer @[email protected] retweeted
The first preprint of my postdoc with @jtdudman is now online! Here we wanted to understand the algorithms mice use when learning to forage in large environments with many potential resources. 1/n biorxiv.org/content/10.110…
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Did you vote today!?!?!? Polls were busy in #virginia this morning! FYI #virginia has same day voter registration! elections.virginia.gov/registration/s…
Carsen Stringer @[email protected] retweeted
Amazing talk about imaging and discovering C. elegans embryogenesis by Hari Shroff from @HHMIJanelia presenting at #I2K2024
Carsen Stringer @[email protected] retweeted
Carsen Stringer @[email protected] retweeted
Carsen Stringer @[email protected] retweeted
🖥️ Rastermap, a new visualization tool developed by the Stringer (@computingnature) & Pachitariu (@marius10p) labs, helps scientists uncover activity patterns in large-scale neural recordings. 🧠 🔗janelia.org/news/new-tool-…
Carsen Stringer @[email protected] retweeted
We performed ephys recordings, in head-fixed and freely moving animals, and found the head-direction system boosts its gain when a landmark is seen—suggesting a mechanism that signals stronger confidence in vision when natural objects are present. 4/
Carsen Stringer @[email protected] retweeted
@eric_denovellis @computingnature 👆 good use case examples/tutorials help a lot!
Carsen Stringer @[email protected] retweeted
@computingnature Guidance for implement on HPC. Colab demo notebook. Suggestions on data size limitation.
Carsen Stringer @[email protected] retweeted
Great tips! We’ve been through this with @thepynapple, to do it properly is much harder than you can imagine.
Six tips for going public with your lab’s software: nature.com/articles/d4158… 1) make time for maintenance 2) simplify installation 3) add a GUI or good CLI 4) good documentation 5) use github/git 6) automated testing Any other tips people have? #OpenScience #OpenSource
Carsen Stringer @[email protected] retweeted
@computingnature Video tutorials like your for using Cellpose
Six tips for going public with your lab’s software: nature.com/articles/d4158… 1) make time for maintenance 2) simplify installation 3) add a GUI or good CLI 4) good documentation 5) use github/git 6) automated testing Any other tips people have? #OpenScience #OpenSource
Carsen Stringer @[email protected] retweeted
We are excited to introduce PetaKit5D, a comprehensive suite of software tools designed to tackle challenges in the handling of large datasets and make processing of petabyte-scale datasets feasible: nature.com/articles/s4159…
Carsen Stringer @[email protected] retweeted
This is a *beautiful* paper and method, and while the paper itself is very careful about drawing conclusions from the variety of datasets it analyzes, I'd say the edifice of "the brain is chaotic" hypothesis is crumbling!
📢 #Rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 nature.com/articles/s4159…. Updates from preprint include analyses of primate data and IBL task data. Video tutorial: youtu.be/oQHq7yUWn2k #Neuroscience #MachineLearning
Carsen Stringer @[email protected] retweeted
Wonderful tool for exploring neural data! Stationary and dynamic patterns, all in one place and along a single dimension. Not a petri dish mold-shaped point-cloud in sight. It’s become one of my favorite ways of trying to guess at what neurons are up to.
Make your next discovery using #Rastermap, a visualization method for large-scale neural data. Paper now out, w/ @marius10p : biorxiv.org/content/10.110…
@martisamuser @taherehtoosi @StphTphsn1 @nasiryahm @hisspikeness @dyamins @aran_nayebi Yes! @Lin_Zhong_ion found changes in visual cortical responses during unsupervised learning, suggests potentially some form of contrastive learning (similar stimuli become more dissimilar with experience). More details here: biorxiv.org/content/10.110… x.com/Lin_Zhong_ion/…
📢 #Rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 nature.com/articles/s4159…. Updates from preprint include analyses of primate data and IBL task data. Video tutorial: youtu.be/oQHq7yUWn2k #Neuroscience #MachineLearning
Make your next discovery using #Rastermap, a visualization method for large-scale neural data. Paper now out, w/ @marius10p : biorxiv.org/content/10.110…
Carsen Stringer @[email protected] retweeted
It's the middle of breast cancer awareness month! I must admit I dislike getting mammograms. It's not the procedure, it's just the fear of the unknown. But, breast cancer can be very treatable if caught early, so please get checked!
Carsen Stringer @[email protected] retweeted
@KordingLab and I efficiently optimize high-dimensional biophysical neuron models with heterogeneous active dendrites using the gradient-based backpropagation of error algorithm typically used to train models in deep learning. Preprint on arxiv: arxiv.org/abs/2407.04025 1/18
Kording Lab 🦖 @KordingLab
64K Followers 3K Following Konrad kording, @Penn Prof, deep learning, brains, #causality, rigor, https://t.co/tTJW05RRfa, https://t.co/qf7ZHxjaK1, Transdisciplinary optimist, Dad, Loves outdoors, 🦖
Patrick Mineault @patrickmineault
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Kanaka Rajan @KanakaRajanPhD
14K Followers 2K Following Associate Professor at Harvard & Kempner Institute. Applying computational frameworks & ML to decode multi-scale neural processes. Marathoner. Rescue dog mom.
Kay M Tye PhD @kaymtye
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Robert Haase @haesleinhuepf
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Adam J Calhoun @neuroecology
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Ameyaltzin Castillo A... @AmeyaltzinCA
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Adva Danielly @ADanielly27845
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Nick Tz @NickTz12
0 Followers 62 Following
Janiesaysyay @janiesaysyay
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V!NCI @Vinci_Aomori
74 Followers 185 Following B3/the Univ of Tokyo 🧠 🎾 Special Interest: Consciousness, Freewill, FEP, Complex system
Shijie He @HeshijieHe
136 Followers 4K Following First-class undergraduate of Westlake University @Westlake_Uni, 2024 Fall exchange @UCSD, PhD Candidate @UTSWMedCenter, keen in neurodegeneration therapies
Jianfeng Cao @JeffCao21425627
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Marcelo @M4rcheLl0_
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Kording Lab 🦖 @KordingLab
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Patrick Mineault @patrickmineault
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Kanaka Rajan @KanakaRajanPhD
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Mackenzie Weygandt Ma... @TrackingActions
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Kay M Tye PhD @kaymtye
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Robert Haase @haesleinhuepf
12K Followers 4K Following #GenerativeAI, LLMs, (Image) Data Analysis, GPUs @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_ #openscience, views:mine
Dan Goodman @neuralreckoning
12K Followers 563 Following Computational neuroscientist @imperialcollege. I like to make stuff: @briansimulator @neuromatch. Mostly posting on 🐘/🦋 now. Check pinned post for links.
allen institute @AllenInstitute
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Ann Kennedy @Antihebbiann
4K Followers 337 Following Theory of brains and behavior | Associate Prof at The Scripps Research Institute
Dan Levenstein @dlevenstein
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Blake Richards @tyrell_turing
16K Followers 2K Following Researcher at @mcgillu combining AI and neuroscience. Also on Bluesky (@tyrellturing.bsky.social) and Mastodon: @[email protected].
Nicole C Rust, PhD @NicoleCRust
9K Followers 815 Following Professor @Penn. Mood and memory scientist. Book: Elusive Cures (Spring 2025). https://t.co/Luxotpp5wJ
Prof Aman Saleem @Aman_sal
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28K Followers 478 Following A pioneering research center where scientists from many disciplines collaborate on science's most challenging problems. https://t.co/Jeu3KqBBI9
Adam J Calhoun @neuroecology
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52K Followers 4K Following We invest in scientists at all career stages who make discoveries that advance human health for decades to come.
MadScientist @MadS100tist
13K Followers 5K Following not here anymore. find me in mastodon and the sky app
Joanne Sheppard @JoRCSheppard
19 Followers 162 Following Scientific Computing Associate at Janelia Research
David L Barack @DLBarack
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Nature Neuroscience @NatureNeuro
554K Followers 256 Following News, commentary and research coverage from the international monthly journal publishing the highest quality of work in all areas of neuroscience.
Lorenzo Posani @LorenzoPosani
621 Followers 537 Following https://t.co/XOVusKLysg Coding and decoding brains 👨💻 ⮂ 🧠 Associate Research Scientist @cu_neurotheory Cofounder @_cubbit 🐝 ☁️
Sverre Grødem @GrSverre
85 Followers 242 Following Postdoctoral research fellow at CINPLA, University of Oslo.
Gautam Dey @Dey_Gautam
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280 Followers 399 Following Associate research scientist at Flatiron
Ali Haydaroglu @ali__haydaroglu
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kameron clayton @ctenigmavar
358 Followers 797 Following Instructor, HMS, Eaton-Peabody Labs, mass eye and ear previous: HMS SHBT PhD, BU
Shreya Kapoor @SKapoor_18
679 Followers 3K Following Formerly @CogCovi |Formerly Data Scientist @MPI-CBS| https://t.co/HWJLt7JPlS. Life Science Informatics @UniBonn Any views posted(if any) are my own :)
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48 Followers 120 Following PhD student @yaleneuro • former RA with @blsabatini at @harvardmed • she/her 🐭
Tahereh Toosi @taherehtoosi
889 Followers 498 Following Associate Research Scientist at Center for Theoretical Neuroscience @cu_neurotheory @ZuckermanBrain @Columbia K99-R00 scholar @NIH https://t.co/4Syx9E8zYu
Blake Russell @NeuroRussell
130 Followers 194 Following @OxNeuro PhD // Holographic optogenetics, 2P imaging, ephys and behaviour with @ArminLak and @paqio // Freelance SciComms, 3D design, animation and modelling
Dr. Sarah Stednitz @SarahStednitz
431 Followers 595 Following Artist, neuroscience postdoc in @LabEthan at @QldBrainInst @UniMelb 🇦🇺🦐🏳️🌈🧠 formerly @MPICybernetics 🇩🇪 @IONatUO 🇺🇲 https://t.co/QwqDIebPK1
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JHU CLSP @jhuclsp
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Alessandro Santuz @alesantuz
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Ana González Rueda @AGonzalezRueda
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Yanan Wu @ynwu98
166 Followers 361 Following PhD candidate @UMLifeSciences Roger Cone Lab | Neurobiologist | Can be found either with mice or cats
Wanyi Liu @wanyi_liu
36 Followers 285 Following Postdoc @EmoryMedicine PhD @rutgers_psych Behavioral & Systems Neuroscience A1/PFC - NCM - S1
Ewa Zarnowska 🦄 �... @ewadorotaz
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Sophia Sanborn @naturecomputes
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NeurodataWithoutBorde... @NeurodataWB
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392 Followers 45 Following A BRAIN Initiative data archive for cellular neurophysiology.
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40 Followers 178 Following PhD student in Computational Neuroscience 🧠 @mcgillu.
Kevin Miller @kevinjmiller10
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Maria Eckstein @eckstein_maria
996 Followers 477 Following follow me on @mariaeckstein.bsky.social Research Scientist @DeepMind, learning & decision making; PhD @UCBerkeley with @Anne_On_TW; https://t.co/uJV6g4qQR7
Dr Kerry Walker 🇺�... @K_M_M_Walker
706 Followers 563 Following Associate Professor @UniofOxford, Auditory Neuroscientist, Reviewing Editor J Neuroscience https://t.co/f4knt5BKjq she/her
Eero Simoncelli @EeroSimoncelli
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Shay Neufeld @noisyneuron
1K Followers 922 Following Neuroscience, data products, & machine learning. Currently at iota biosciences | Previously @inscopix, @Harvard, @McgillU
Benjamin Cowley @BenjoCowley
1K Followers 302 Following Computational neuroscientist. Assistant professor at Cold Spring Harbor Laboratory.
Joao Pereira @jdpereira
8K Followers 5K Following Neurodegeneration, organoids and iPSCs! Also science careers! Assistant Professor, UAB Neurology, KCNET. Views and opinions expressed are mine alone.
Matthias Bethge @MatthiasBethge
5K Followers 112 Following Computational Neuroscience, Machine Learning, Deep Neural Networks
Alexander Bates @as_bates
693 Followers 709 Following #neuroscience #connectomics #natverse @harvardmed w/ @RachelIreneWils. Past: @MRC_LMB w/ @gsxej, @CamZoology, @flyconnectome. Distant past: @uclnpp. https://t.co/0eZdKDZ8CD
Nils Eckstein @BobQubit
378 Followers 2K Following AI, Art & Immortality. ML @ https://t.co/4uDpBT0kue, HHMI Janelia | Physics @ ETHZ.
Hannah Payne @HannahPaynePhD
705 Followers 167 Following Assistant professor of psychology & neural science at NYU. Studying the hippocampus, vision, and episodic memory in modern dinosaurs.
Paula Cauhy @paulavmc
105 Followers 354 Following PhD student in the Duff lab @ukdri @ucl @Neurasmus_ alumna @univbordeaux and @VUamsterdam 🇧🇷🇧🇷🇧🇷
Greg Jefferis @gsxej
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Anna Foix @FoixCli
222 Followers 260 Following PhD at @emblebi @Cambridge_Uni (Uhlmann group) turning bioimages into numbers and finding the stories they hide. Loves math, climbing and manga
Redwood Center for Th... @Redwood_Neuro
1K Followers 203 Following The Redwood Center for Theoretical Neuroscience is a group of faculty, postdocs and graduate students at UC Berkeley. Account run by students.You might like
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