Peter Simmonds @Simmonds_Lab
Peter Simmonds runs a research group in University of Oxford. Very interested in the broader evolution of viruses and constraints under which they are placed. ndm.ox.ac.uk/principal-inve… Oxford, England Joined June 2017-
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Here is my re-visiting of the C->U hypermutation phenomenon in SARS-CoV-2 genome 4 years from the start of the COVID pandemic: tinyurl.com/mw3ezp6c A trajectory of loss of C's / gain of U's, but weak 5' context effect and RNA structure dependence on edited sites. APOBEC 3A??
Before #COVID19, when was the last #coronavirus #pandemic? Some have argued for 1889-1892 for the zoonosis of human #OC43 from bovine coronavirus, but in our new paper: journals.plos.org/plosone/articl…, we suggest 1899-1900, based on a review and replication of existing molecular data.
Have you ever wondered how nucleic acid editing pathways (APOBEC, ADAR, and epitranscriptomics) might impact the adaptation of zoonotic viruses to humans? Of course you have! Lucky for you, we have a new review in COVIRO considering just that issue: authors.elsevier.com/c/1gtX36hO9tXx…
The largest study to date on the viruses residing within our tissues Unmasking the tissue-resident eukaryotic DNA virome in humans academic.oup.com/nar/advance-ar…
@AdrianJ44426152 @simroux_virus This should provide at least an initial guide to how a virus (or a virus sequence) might be assigned. It also provides downloadable alignments of informative genes used for classification. Each chapter is regularly updated, and most virus families are now included.
@AdrianJ44426152 @simroux_virus The online (10th) ICTV Report: ictv.global/report provides comprehensive information on the assignment criteria for species and other ranks that are used for each virus family, and a description of the properties of members of each.
Four principles to establish a universal virus taxonomy journals.plos.org/plosbiology/ar… It was a wonderful experience to share a workshop with world experts on virus diversity, genomics and classification.
@AdrianJ44426152 @simroux_virus The downloadable ICTV Virus Metadata Resource contains information of virus names and the taxon they are assigned to: ictv.global/vmr As an example, here is the listing for members of the genus Hepacivirus. Is this what you meant?
@edwardcholmes @DuckSwabber I'll let the experts comment here on alignments, but I don't think there is any doubt that RNA viruses possess a homologous RdRp. As described, there is clearly scope for structure-based or other analyses to better define deeper phylogenies. As for cellular reconstructions.....
We believe these principles can be used to create a coherent and logical organisational structure for virus taxonomy that can incorporate the vast diversity of viruses that exist in the world.
These principles traverse a range of seemingly intractable points of disagreement and contention that have bedevilled virus classification since its inception in the 1960s. Resolution of these conflicts provides a clear strategy for harnessing the genomics revolution in virology
@edwardcholmes @DuckSwabber RdRp is the hallmark gene for the realm of most RNA viruses, clearly homologous and distinct from cellular polymerases. Other gene sets are used for other realms. Analogous to constructing deeper phylogenies of prokaryotes, eukaryotes and archaea using ribosomal genes?
@ArisKatzourakis @josegabrielnb @OxfordBiology @alexander_suh Many congratulations @josegabrielnb , not just for the fascinating and enlightening discussion during the viva, but also for that body of great work on mavericks and virus evolutionary history. A fantastic DPhil! Great also to meet with Alex @alexander_suh, many shared interests
@ArisKatzourakis Well, the Oxford comma does prevent this (published!) book dedication being misunderstood: To my parents, Ayn Rand and God. Spiritual ancestry indeed! or: Among those interviewed were his two ex-wives, Kris Kristofferson and Robert Duvall I never knew! Thanks Wikepedia,
Come and work with some fantastic people (Oxford/UCL) on using genomics to improve safety of transfusion and transplantation: jobs.ac.uk/job/CKU178/pro… jobs.ac.uk/job/CKV942/pos… Fully funded Oxford PhDs: ndm.ox.ac.uk/study/dphil-th… Fully funded UCL PhD: jobs.ac.uk/job/CKJ558/phd…
Project background: Genomic Revolutions in Donation Screening and Safety (GRiDDS) is funded NIHR for 5 years and providing resources for a major expansion of genomics-based technologies in blood and transplant donation screening and emerging virus / pandemic preparedness .
Links for the posts: In Oxford: tinyurl.com/6tvz4r8c tinyurl.com/5b2dvpnh in UCL: tinyurl.com/hf2xh6d8 and the PhDs for Oxford: tinyurl.com/kh822v9v and UCL: tinyurl.com/39u2wkpr
We will be starting a major project to apply genomics to blood and transplant donor microbiology screening. We have project manager, post-doctoral and several funded PhD positions in Oxford and UCL - Apr/22. Great collaborative work with NHSBT: Links to follow Please RT!
Marion Koopmans, publ... @MarionKoopmans
79K Followers 3K Following https://t.co/x3zIbMPDg5 Viroscience Dpt, WHO collaborating centre EID. Schelden = block
VignuzziLab @VignuzziLab
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Aris Katzourakis @ArisKatzourakis
32K Followers 1K Following Paleovirology, cross-species transmissions, evolution, genomics, viruses, selfish genes. UCU NEC, Branch Hon Sec, Oxford Biol. Tweets mine, retweets not.
MRC-Uni of Glasgow Ce... @CVRinfo
7K Followers 1K Following Fascinated by viruses and the diseases they cause. @The_MRC @UofGlasgow
European Virus Bioinf... @EVirusBioinfC
6K Followers 347 Following Bringing together the excellence of virology and bioinformatics. Meeting: #ViBioM2025
Robert Gifford @Paleovirologist
3K Followers 2K Following I research the evolution of viruses and their impact on host species. Open science.
Elly.Gaunt_lab 💙 @GauntLab
4K Followers 876 Following We love RNA viruses! Roslin Institute, University of Edinburgh
Tulio de Oliveira @Tuliodna
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Connor G. G. Bamford,... @cggbamford
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Spyros Lytras @SpyrosLytras
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Harmit S. Malik @HarmitMalik
43K Followers 7K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
Dr Charlotte Houldcro... @DrCJ_Houldcroft
7K Followers 930 Following Lecturer working on virus evolution, from a scale of weeks (within a single patient) to millennia (between humans and Neanderthals).
Ash Otter @asherichia
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Microbiology Society @MicrobioSoc
76K Followers 1K Following Microbiology Society: A world in which the science of #microbiology provides maximum benefit to society | https://t.co/tMDafCE6df
Stephen Griffin @SGriffin_Lab
27K Followers 9K Following Professor of Cancer Virology | Viroporins, Antivirals, Viral Oncology, Immunotherapy | Own views | @IndependentSAGE @LongCovidKids @projecthalo #VaccinesPlus
Nature Reviews Microb... @NatureRevMicro
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Stéphane Blanc @Stefandkex
969 Followers 670 Following Virus, virologie, evolution, transmission, plant, insect, vector, virology, virus population, multipartite virus, multicomponent virus, segmented genome
Dr Lindsay Broadbent @LindsayBbent
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Clive McKimmie (VHIT)... @VHIT_Mckimmie
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Luis Antonio @H2tone
32 Followers 332 Following Me apasiona la investigación en enfermedades infecciosas.
Walter Hunter @waltersamhunter
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RAM KUMAR B @Ram_kumar_B
27 Followers 954 Following Master's in Biotechnology | MSc Dissertation at CSIR-CCMB | Research Assistant at RGCB
Santiago Oviedo-Rouco @SOviedoRouco
110 Followers 191 Following Postdoc at the Molecular Virology Lab Instituto Leloir-Conicet
Kyle Chih-Hsu Chang, ... @chihhsuc
251 Followers 2K Following Substitute Military Service in Taiwan (~2023.03). PhD in @AcadSinica Interested in virus-host interaction.
Mingcong Zeng @MingcongZeng
2 Followers 48 Following
Nick H @breakfastnick
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Odysseus @rwlander
154 Followers 314 Following
Deinococcus @Deinococcusbase
1 Followers 5 Following CA:0x29b91534c04774c48e4b40cfe2afbe7241ff5c1f We were born in https://t.co/zn9K358oRh
Ritika Sengupta @RitikaSG21
25 Followers 530 Following Research Scientist | Clinical trials research unit @ttcrc_kolkata | IPGMER | 👩🏻🔬PhD expertise: Infection and immunology🧬 Dog mommy 🐶 Dance enthusiast 💃🏻
Barry Bentley, PhD, F... @bbentley_1
1K Followers 7K Following Reader (Assoc. Prof.) in Bioengineering @cardiffmet | Fulbright Scholar @HarvardMed | Head, Bio-AI Lab @eurekarobot | Formerly @MRC_LMB @Cambridge_Uni
Natalia Echeverría �... @naty_virologa
579 Followers 773 Following virologist, working on HCV translation. shifting to phage biology. Mom to Agus & Mateo❤️. Dog owner & lover 🐶. She/her. views of my own
Jonathan Haars @JonathanHaars
80 Followers 614 Following Phd-student and laboratory technician at Uppsala University Hospital/Uppsala University Working with #SARSCoV2, #Metagenomics, #NanoporeSequencing
Readwithaziz @ilovetotrave
218 Followers 5K Following
HCV-Flavi 2025 @HcvFlavi2025
89 Followers 121 Following 31st International Symposium on Hepatitis C Virus, Flaviviruses, and Related Viruses
Hana Andrew @HanaAndrew3
0 Followers 35 Following
MRS ELON MARY KINSMAN @maryelon81
21 Followers 265 Following I AM WHO I AM..I DON'T GIVE A FUCK ABOUT ANY A**HOLE..😘♥️♥️
Yazeed @yazeedalharbi5
86 Followers 429 Following Master in Microbiology @_KSU interested in virology, the kind that make you sick 🦠 #enterovirus
Miranda @mfn42
487 Followers 2K Following PhD student working on avian influenza | Interested in all things viruses & antiviral immunity | she/her 🔬🧬🦠
Martin Mölder @MolderMartin
156 Followers 651 Following Here to chew gum and repost stuff without reading it. And I'm all out of gum. Not wearing a respirator = ableism. Flying = climate denial.
Virology Research @VirologyResear2
157 Followers 953 Following
NVRL sequence @NVRL_Sequence
1 Followers 59 Following
Carlos O. Lomeli-Orte... @8695clo
2K Followers 2K Following postdoctoral researcher at CIBNOR. Phage therapy, Vibrio, probiotics, microbial ecology, and shrimp.
Mayara Bertanhe @BertanheMayara
61 Followers 250 Following Veterinarian 🐒. PhD student at the FMUSP 🇧🇷 & ICL 🇬🇧. In @CaddeProject working with: NGS, infectious diseases, One Health 🌎. Views my own. (She/Her)
Isobel Stokes @Isobel_M_Stokes
26 Followers 57 Following PhD student studying poxviruses in the Maluquer lab, University of Surrey
Amanda Andrade @aandradebio
73 Followers 489 Following PhD Candidate in Genetics at UFRJ; Msc in Computational Modeling at LNCC; Bioinformatician 🧬👩💻
Peter Markov @pvmarkov
415 Followers 72 Following Epidemiology, viruses, emergence, evolution Joint Research Centre London School of Hygiene & Tropical Medicine Formerly: ECDC, Uni of Oxford Opinions are my own
Takashi @taqkondo
98 Followers 453 Following Virology (SFTSV, RSV, Mucosal Immunity) / Philosophy of science Hokkaido→Tsukuba→NIID/Chiba
Rene Sugar @renesugar
4K Followers 4K Following
Fred Tores @Fred_Tores
21 Followers 2K Following autodidata visual artist curious about other fields
Rick Bright @RickABright
49K Followers 3K Following Practical, Innovative, Hyper-focused on saving lives. Immunologist, Virologist, Pandemic Nemesis. Posts are mine.
Sean Feeney @Sean_Feeney_
185 Followers 897 Following “...the key is turned On our uncertainty; somewhere A man is killed, …, Yet no clear fact to be discerned; Come build in the empty house of the stare.” WB Yeats
J @J18691375
119 Followers 1K Following
OtherDays @OtherDays_Music
584 Followers 3K Following Band based in Belgium, Spain, Canada, USA Listen to our music at: https://t.co/GhIPYqnHrm https://t.co/aHj5aVuiUq
Milla Gois @MillaGois
161 Followers 225 Following Microbiome in Health and Disease | Exposome | PhD Candidate at @UMCGgenetica
Virus infections and ... @awesome_viruses
598 Followers 350 Following Group of researchers at @helsinkiuni @HelsinkiUniMed with a passion for persistent viruses and the virome. Account managed by multiple persons.
Nikita Trojanskis @nikitatr1
9K Followers 6K Following Building sand that cures all disease @AmorphousAI | PhD ML @UniOfOxford | Paul Thomas Anderson & Kore-eda 📽️
Zahid Saeed Tanoli @ZahidSa01798444
5 Followers 76 Following Scholarship Network, Foreign Scholarship Community, Zoologist, Bioinformatics, Research Assistant
AdrianGibbs1934 @AdrianJ44426152
386 Followers 710 Following Concerned crumbly. Biologist who works on the evolution of viruses. Photo 1954!
Uri Neri @UriNeri2
594 Followers 809 Following Meta/viromics. RNA viruses, Dead Sea, Archaeal viruses, Linux and FOSS. Data scientist @JGI Formerly of Gophna lab @ TAU Mastodon @[email protected]
Ombeline Rossier @OmbelineRossier
296 Followers 777 Following Microbiologist fascinated by host-microbe interactions, especially host takeover by bacteriophages. Associate Professor, @I2BCParisSaclay @UnivParisSaclay
Marion Koopmans, publ... @MarionKoopmans
79K Followers 3K Following https://t.co/x3zIbMPDg5 Viroscience Dpt, WHO collaborating centre EID. Schelden = block
VignuzziLab @VignuzziLab
16K Followers 8K Following Mostly post about fitness and food in 🇸🇬 Singapore. some science lab stuff too.
Aris Katzourakis @ArisKatzourakis
32K Followers 1K Following Paleovirology, cross-species transmissions, evolution, genomics, viruses, selfish genes. UCU NEC, Branch Hon Sec, Oxford Biol. Tweets mine, retweets not.
MRC-Uni of Glasgow Ce... @CVRinfo
7K Followers 1K Following Fascinated by viruses and the diseases they cause. @The_MRC @UofGlasgow
Robert Gifford @Paleovirologist
3K Followers 2K Following I research the evolution of viruses and their impact on host species. Open science.
Elly.Gaunt_lab 💙 @GauntLab
4K Followers 876 Following We love RNA viruses! Roslin Institute, University of Edinburgh
Ed Rybicki 🇿🇲�... @edrybicki
4K Followers 224 Following A highly opinionated virologist who dabbles in molecular farming and vaccinology, science fiction and red wine. Sometimes all at once. 🇿🇦🇿🇲🚀🍷
Connor G. G. Bamford,... @cggbamford
8K Followers 3K Following Viruses, host-pathogen interactions, innate immunity, evolution Virology lecturer (~Asst. Prof.) @QUBBioscience / @QUBIGFS | @BamfordAVILab
Spyros Lytras @SpyrosLytras
3K Followers 1K Following Head of the Antigen Evolution and Design lab at Institut Pasteur 🇫🇷 Molecular Evolution, Phylogenetics, Viral Genomics (he/him) 💻🔬🏳️🌈
Harmit S. Malik @HarmitMalik
43K Followers 7K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
Stephen Griffin @SGriffin_Lab
27K Followers 9K Following Professor of Cancer Virology | Viroporins, Antivirals, Viral Oncology, Immunotherapy | Own views | @IndependentSAGE @LongCovidKids @projecthalo #VaccinesPlus
Nature Reviews Microb... @NatureRevMicro
81K Followers 2K Following
Tom Holland @holland_tom
378K Followers 1K Following New translation of Suetonius out now! Dinosaur lover. ‘A leading English cricketer' - The Times. Podcast: @theresthistory
Elisabeth Bik @MicrobiomDigest
144K Followers 44K Following Science integrity consultant, PhD. #ImageForensics @METRICStanford affiliate / https://t.co/2xH3WdXTFr / https://t.co/V4MR7WV9tl 🇳🇱🇺🇸
Peter Markov @pvmarkov
415 Followers 72 Following Epidemiology, viruses, emergence, evolution Joint Research Centre London School of Hygiene & Tropical Medicine Formerly: ECDC, Uni of Oxford Opinions are my own
Virus infections and ... @awesome_viruses
598 Followers 350 Following Group of researchers at @helsinkiuni @HelsinkiUniMed with a passion for persistent viruses and the virome. Account managed by multiple persons.
Alexander Suh 서상�... @alexander_suh
4K Followers 3K Following Biologist studying genomes of animals, transposons, and viruses. German-Korean. Berliner. Foodie. Other addictions: climbing, scuba diving, snowboarding.
Genomics to Enhance M... @BTRU_GEMS
54 Followers 21 Following The @NIHRresearch funded Blood and Transplant Research Unit in Genomics to Enhance Microbiology Screening is a partnership between @UniofOxford, @ucl and @NHSBT
Teemu Smura @SmuraTeemu
409 Followers 269 Following
Jeremy Ratcliff @jeremydratcliff
623 Followers 912 Following RS @GoogleDeepMind | PhD @NDMOxford via @MarshallScholar, ex-@JHUAPL | Public health, pathogens, pandemics | Views own.
Anna McNaughton @AnnaLMcNaughton
517 Followers 1K Following Virology, epidemiology & genomics. Research Fellow @BristolUni - Mostly interested in #HBV #viralhepatitis 🧬🦠
Tanya Golubchik @tanyagolubchik
194 Followers 107 Following I am fewer than 160 characters. Even on my bad days.
Prasad @vinayaka1prasad
1K Followers 2K Following HIV replication, neuroAIDS, ESCRTs & HIV budding; IISc Alumnus; AAM Fellow; mBio Editor mini-reviews on viruses;Hubby to a virologist- @gvkalpana; ಕನ್ನಡಿಗ
Robertson @robertson_lab
3K Followers 2K Following Computational virology research group exploring virus evolution, virus-host interactions & disease, in @CVRbioinfo, part of @CVRinfo. Posts by @DavidLRobrtson.
Alfredo Castello @Alf_Castello
1K Followers 543 Following Professor at the MRC-University of Glasgow Centre for Virus Research
Stephen Laidlaw @StephenMLaidlaw
103 Followers 155 Following Emerging viruses Postdoc currently researching the immune response and antivirals against Monkeypox, SARS-CoV2 and other coronaviruses.
The Grey Lab @lab_grey
221 Followers 115 Following The Grey lab focuses on studies of host-virus interactions using systematic approaches 🦠🧪🧫🧬💊 #Virology
CVR Bioinformatics @CVRbioinfo
2K Followers 467 Following Welcome to our Twitter feed. We’re a group of computer-based researchers, part of the MRC-University of Glasgow Centre for Virus Research (CVR) @CVRinfo
Chad Swanson @Swanson_Chad
383 Followers 193 Following Scientist and lecturer @KingsCollegeLon. My lab studies how antiviral RNA binding proteins work. All views are my own.
Jonathan Ball @JonathanKBall
5K Followers 2K Following DVC @LSTMnews | Hon. Prof @UniofNottingham | Prof of #Virology working on #EmergingViruses. Ex-@BritSciAssoc #MediaFellowship @BBCNews | Occasional Sci Comms
Stuart H Black. 🏴�... @StuartHBlack1
13 Followers 107 Following Retired, sharing with family and friends all the things that I enjoy. Aka loving the life I live. Any re-tweets are of interest to me.
Stonehouse Rowlands L... @Stonehouse_Lab
401 Followers 113 Following The lab group of Profs Nicola Stonehouse and Dave Rowlands at the University of Leeds. Our work focuses on viral replication and novel vaccine strategies.
Harris Lab @HarrisLabLeeds
720 Followers 416 Following In the Harris lab at UoL, we focus on Virus-Host interactions of HCV and several Alphaviruses (CHIKV, ONNV, MAYV). Account ran by the PhD students!
Ellis @ellistorrance
323 Followers 556 Following Postdoc at 🍉lab @doecsgf alum. Working to understand the little things in life!🔬📈 #bioinformatics #microbiology #evolution #hpc
Picornavirus Molecula... @PicornavirusB
880 Followers 162 Following Virus research in the Picornavirus Molecular Biology group led by Toby Tuthill at The Pirbright Institute.
Thea K Fischer, Prof.... @TheaKFischer
2K Followers 422 Following Udtaler mig om virus, epidemier, pandemier, og public health på egne vegne. Udvikler nye modeller for epidemi respons incl. virtuelle hospital@home løsninger.
Sam Lycett @hxnx_sam
454 Followers 144 Following I am a computational biologist and research the evolution and spread of pathogens over networks and between species.
Rob Lavigne @RobLavigne1
5K Followers 1K Following All things bacteria, phage and other viruses. Biology to biotechnology. I actually enjoy teaching too! Hobbies? what are those?
Derek Gatherer @DerekGatherer
641 Followers 5 Following Lancaster University Institute for Social Futures + Faculty of Health and Medicine.
Simon Roux @simroux_virus
4K Followers 2K Following Virus-obsessed 🇫🇷 bioinformatician, DOE JGI Scientist, Having fun with #metagenomics and other cool #omics. He/him. Opinions my own. simrouxvirus on bsky
Sead Sabanadzovic �... @sejovirus
2K Followers 2K Following Professor of Virology, Mississippi State University; CIHEAM-IAM Bari & Univ of Bari Alumnus. Virome, taxonomy, genomics, evolution. Tweets (opinions) are my own
Jordan Ashworth @_jordanash
499 Followers 1K Following Bioinformatician | Public Health Scotland 🏴 🦠 🧬
Josh Singer @joshWentViral
451 Followers 447 Following Research software engineer at MRC Centre for Virus Research (@CVRinfo), University of Glasgow. Working on #GLUEtools (https://t.co/FHIyayHV75)
Emma Thomson @emcat1
3K Followers 1K Following Clinical professor of infectious diseases & virologist. I work on emerging viruses and NGS diagnostics in the UK and Uganda 🦠 🧬 🇬🇧 🇺🇬Also on 🦋
Ross Fitzgerald @jrossfitz
3K Followers 1K Following 🇮🇪🇪🇺 Microbiologist interested in bacterial evolution, pathogenesis, cricket, rugby, whiskey and similar wonders of life
Curtis Suttle @Virosphere2012
2K Followers 518 Following Purveyor of the https://t.co/iKDI174lmH Prof Earth, Ocean & Atmospheric Sciences, Microbiology & Immunology, Botany, and the Inst for the Oceans & Fisheries
Santiago F. Elena @SantiagoFElena
961 Followers 320 Following
Pakorn Aiewsakun @GarnPakorn
3 Followers 3 Following
Rory Bowden @rorybowden
301 Followers 221 Following Genomics Lab Head and Manager, Advanced Genomics Facility at WEHI
Philippe Lemey's lab @LemeyLab
1K Followers 145 Following Tweets sometimes by Philippe Lemey, but usually by other (mysterious) lab members! Thus, opinions, likes and retweets may not express PL's own view 🤫
Flavivirus Virus @TheFlaviviruses
447 Followers 32 Following West Nile, Yellow Fever, Dengue... If it's a virus, and it causes encephalitis, we know it. We know it well.
paleovirology @paleovirology1
950 Followers 346 Following Tweeting the latest papers in paleovirology and related topicsYou might like
