Greene Laboratory @GreeneLab
Greene Lab @ the Department of Systems Pharmacology at @PennMedicine. News account used for Greene Lab website. You might prefer to follow @greenescientist greenelab.com Philadelphia, PA Joined November 2012-
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“Manubot is a series of software packages, as well as some of the glue to tie them together, that lets you turn a GitHub repository into a self-published manuscript.” natureindex.com/news-blog/thre…
Prodigious #SVG tutorial created by our frontend developer @VinceRubinetti. Learn how to code SVGs by hand with 6 practice exercises. greenelab.github.io/intro-to-svgs/
Our paper "Open collaborative writing with Manubot" is now available at @PLOSCompBiol. #Manubot uses Markdown + GitHub for continuous publication. doi.org/10.1371/journa… 1/8
Videos from #FORCE2018 now online. 🎥 See my talk on #Manubot at youtu.be/sGL0osdby0U?li… (playlist links to other talks). Thanks @force11rescomm for the great recording & releasing it under a @creativecommons license… wish all conferences did this!
Projects include: • Manubot: a system for writing scholarly manuscripts on GitHub greenelab.github.io/manufund-2018/ • Adage: neural network based gene set analyses adage.greenelab.com • Tribe: crowdsourced gene collections tribe.greenelab.com Where big data & biology meet!
Interested in making webapps to help research diseases & make science more accessible, transparent & reproducible? The @GreeneLab is hiring a frontend software engineer in #Philly. Job includes #uiux, #reactjs #webdev #css #js #git #opensource jobs.hr.upenn.edu/postings/37984
Manubot v0.2.0 now released at pypi.org/project/manubo… including the `manubot cite` command-line utility. Easily generate CSL metadata and references for 1000s of bibliographic styles from standard citation identifiers, such as doi:10.1038/nbt.3780; pmid:29424689; arxiv:1407.3561
"Revolutionizing scholarly writing with the Manubot: a foreshadow of publishing's future" by @dhimmel. Come see this and other amazing talks at #FORCE18 this October in Montreal! buff.ly/2ILp359
Yesterday we celebrated with @nanditagarud who will be joining @uclaeeb as a new faculty in 2019! We are so excited for you Nandita!
#GI2018 @GreeneScientist shows that PLIER can be applied to many datasets and you can use the latent vars to ID function across OTHER datasets. bit.ly/MultiPLIER I think this is the PLIER package: github.com/wgmao/PLIER
Casey’s lab develops methods to analyze big biological data and makes these tools/data accessible for the rest of us. If you want a brilliant and inspiring postdoc mentor with a refreshing irreverence for the status quo, look no further!
The accepted manuscript of the @Sci_Hub Coverage Study published in @eLife (typeset version in the next few weeks) doi.org/10.7554/eLife.… Thanks @arielswn, Levernier, Munro, @SteveMcLaugh, @gedankenstuecke, and @GreeneScientist for your contributions!
@anshulkundaje @GreeneScientist One takeaway is that everyone was so helpful and constructive when reviewing new text. Working toward a common goal made it very different from typical manuscript review.
In a rebuke to the closed world of scientific research, volunteer coders help @Penn take on cancer! By @roxanneshep thephiladelphiacitizen.org/code-for-cance…
#Cognoma Launch Party tonight at @MilkBoyPhilly. Details at meetu.ps/3dzlvc. Get ready for the celebration and historic raffle!
Getting ready for tomorrow! @ProjectCognoma #cancerwecominforyou #cancer #data #technology #philly #phillytech #developers #Penn #ALSF
The #Cognoma Launch Party 🎉 will be 6–9PM Wednesday, October 11, 2017 at @MilkBoyPhilly. Hope to see you there! meetu.ps/3dzlvc
Manubot's use of Continuous Integration mentioned in @NatureNews at doi.org/cdvr. Manubot uses CI for continuous publication!
Research parasites wanted. Q&A w/ @GreeneScientist & @thebyrdlab on the #researchparasite & #researchsymbiont awards gigasciencejournal.com/blog/research-…
I just wrote my first ever blog post! It's about the Data Refinery, a project I've been working on for a while: ccdatalab.org/blog/data-refi…
New blog post from @datawheeler about the #DataRefinery we're building! ccdatalab.org/blog/data-refi…
Arjun Raj @arjunrajlab
49K Followers 2K Following Just another LLM. Tweets do not necessarily reflect the views of people in my lab or even my own views last week. https://t.co/fZAnUCqd12
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
Casey Greene @GreeneScientist
8K Followers 2K Following Chair of @CUBiomedInfo; @CUMedicalSchool. https://t.co/sYjdsEOBZ4 / https://t.co/JxSlN1dd3J / Views mine, not employer's.
Jason H. Moore, PhD @moorejh
34K Followers 17K Following Chair, Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles. Informatician. Data scientist. AI. Atari enthusiast. FSU & UMich grad.
𝕐 @nomad421
9K Followers 902 Following I ♥ science & compiled, statically-typed programming languages! I dislike slop in all forms, including slop thinking. Views are my own, but are obviously right.
ShorterLab @ShorterLab
13K Followers 7K Following Countering deleterious phase transitions in ALS/FTD, PD, AD, and related disorders @Penn @PennMedicine @bb_upenn @BMBGGUPENN @PGGUPenn @PennNGG @CAMBUpenn
Ariel Hippen, PhD @ariel_hippen
418 Followers 297 Following PhD Computational Biology, UPenn. Interested in cancer genomics, machine learning, open science and looking for new opportunities. She/her.
Gregory Way @gwaybio
1K Followers 1K Following Biologist and Biomedical data scientist | Assistant Professor @CUBiomedInfo at @CUMedicalSchool
Donita Brady of Brady... @bradylabupenn
3K Followers 4K Following Presidential Associate Professor of Cancer Biology @Penn_CBIO & Asst. Dean @RTAatPennMed @PennMedicine. Tweets her own.✊🏾🏳️🌈
UPenn GCB @UPennGCB
1K Followers 243 Following We are the Genomics and Computational Biology graduate group at the University of Pennsylvania.
Daniel Himmelstein @dhimmel
2K Followers 763 Following Founding @radoverlay · Digital craftsman of the biodata revolution · Open sourcerer · Tamer of #hetnets
Research Trainee Affa... @RTAatPennMed
2K Followers 2K Following Our office fosters a research-driven community through training, recruitment, development, support, and wellness initiatives to empower future scientific leader
Ra @farael_rafael
1 Followers 53 Following
Qinglin Zhu @qinglin_zhu1
24 Followers 1K Following
Suave @Suave3192195060
47 Followers 4K Following
Septiari IGAA @i_septiari
302 Followers 5K Following
SheqLab @ShechnerLab
3K Followers 2K Following The Shechner lab in UW Pharmacology. We study Noncoding RNAs and cellular architecture. He/His/Him. All comments are my own. @ShechnerLab.bsky.social
Amarnath Rajendran @amarnathyuvi
212 Followers 735 Following Postdoctoral Researcher @UAlberta | Polymer Chemist | Research in Polymers & Therapeutic Biomaterials | Gene Delivery & Drug Delivery
RJ_Genomics @RJ_genomics
198 Followers 3K Following Cardio metabolic Disease, HF, Autoimmunity, brain, EHR, GWAS, PRS, MR, PheWAS, ML, AI, Genomics, Omics, Imaging, biomarker genetics, quant psychometrics
Sai Zhang @saizhang0
2K Followers 1K Following Assistant Professor @YaleBIDS @YaleMed | #AI × #Biomed | Views are my own.
Maria Francis Palafox @mariafpalafox
351 Followers 865 Following Independent consultant in personalized health, metabolism & neurobiology 🧬🥦🧠 | PhD @UCLAgenetics | Mount Sinai alum | @UTAustin 🌶️ | 🎹 🐇
Han Yuan @HY3952
454 Followers 412 Following Computational biologist @Calico. Previously Ph.D in Leslie lab at @MSKCC. Study system biology and regulatory genomics.
Ye Zheng @yezhengSTAT
1K Followers 1K Following Assistant Professor@MD Anderson Bioinfo and Comp Bio (joint Systems Biology); NIH/NHGRI K99; Statistics; Epigenomics and 3D Genomics; Cancer Studies
CU Department of Biom... @CUBiomedInfo
820 Followers 834 Following Education | Research | Clinical Impact DBMI connects basic science and medicine with clinical and translational scientists at the @CUAnschutz Medical Campus
Zhiyun Gong @Zhiyun_G
166 Followers 1K Following PhD student at Dartmouth🌿| MS Computational biology graduate from CMU
Damianos P. Melidis �... @damianosmel
333 Followers 1K Following Dr. rer. nat. & Bioinformatics Scientist @platomics. Alumni of @unihannover. From sunny Athens 🇬🇷. Opinions and grammar are mine!
Nathan LaPierre @nlapier2
278 Followers 814 Following Computational biologist. Postdoc at @DanaFarber and @harvardmed with @SashaGusevPosts. Like/follow ≠ endorse.
Ernesto Aparicio-Puer... @el_aparicio_
586 Followers 2K Following Bioinformatics, miRNA, cancer Postdoc @UofR @matthewnmccall's lab. Previously @CCB_CBI. PhD @CanalUGR @MichaelHackenbe. @FulbrightPrgrm alumnus
Stephen Bonner @SBonner0
174 Followers 362 Following Machine Learning and Drug Discovery at @AstraZeneca (views my own). PhD @durham_uni, passed through @computingncl, @gliffai, @CriteoAILab
Arnav N @orgbrutalist
40 Followers 1K Following Molecular Engineering PhD Program at University of Washington
Liu Xiaoping 刘小�... @Liuxiaoping_WHU
240 Followers 1K Following Interested in single cell and spatial omics, digital pathology, cancer Fitness enthusiast，guitar noise maker LOVE CHINA
Yingxin Lin @LinYingxin
311 Followers 313 Following PhD @Sydney_Uni ➡️ Postdoc @Yale | Applied statistics | Bioinformatics | Biomedical data science | Single cell 🧬
Hani Jieun Kim @hani_jieun
907 Followers 2K Following Senior Research Officer @dralexswarbrick Lab & @GarvanInstitute | Conjoint Lecturer @UNSW
Alos Diallo @alos_31
345 Followers 3K Following E.E. Just Liftoff Fellow in Quantitative Immuno-oncology: @QBSdartmouth and @GeiselMed previously at @harvardmed @Harvard_Imm & @HarvardMicro
Arvind Iyer @Arvind_k_Iyer
669 Followers 3K Following Learn♥️& Exploring #science | Postdoctoral Fellow @UHN @MatLupien| Ph.D under @CirielloLab | Personal Views | Alumini @IIITDelhi @unil @IGIBSocial | 🇮🇳🇨🇭
もぐぷろ @mogproject
472 Followers 461 Following Developer of Shogi Playground (https://t.co/FPwoum8wdr). Loves games (https://t.co/zq32o0vIvM) and music (https://t.co/AfP3Fosetz).
MSBDartmouth @MsbDartmouth
344 Followers 302 Following Formed in 2016, the Dept of MSB intends to unite faculty with diverse scientific interests. See more about us at https://t.co/qSdd3AJC1I
Ranga Sudharshan @Ranga_S_
38 Followers 371 Following Research Associate at Umich, Ann Arbor • IIT(BHU) Alum• Working on #heterogenousdataintegration #singlecell #bioinformatics
Marcel Brun @BrunMarcel
198 Followers 616 Following Assistant Director, Institute Genomics and Bioinformatics Service. Texas A&M AgrilLife.
Atul Deshpande @atulpdeshpande
195 Followers 409 Following Assistant Professor, Quantitative Sciences in Oncology, Johns Hopkins
Hyebin Han 한혜빈 @HyebinHanTBD
38 Followers 127 Following Pronounced "Heh-bin" 4th year PhD candidate @Northwestern 👩🏻🔬
Kathleen Sprouffske @ksprouffske
93 Followers 145 Following Data scientist. Cancer epi/genomics, evolution, models.
Phila Med Research @PennMedResearch
615 Followers 3K Following
Zixuan (Eleanor) Zhan... @elezzx2020
421 Followers 1K Following Postdoc @PennMedicine working with Drs. Brielin Brown, Bogdan Pasaniuc, and Michael Gandal. Statistical genetics, functional architecture, single cell data.🧬
Pennsylvania NY NJ Bi... @PNBionetwork
769 Followers 4K Following Life science news and jobs from Pennsylvania, New York and New Jersey, including Philadelphia & NYC. Part of @BiotechNetworks, connecting #biotech since 2008.
Pankaj Agarwal @pa_agarwal
151 Followers 727 Following TaRCoS: Target ID and Drug Repurposing Consultative Solution, https://t.co/k2Mjsa1Jex; Bioinformatics; https://t.co/tnbycWLKM4: Physician & Scientist Recruiting
Thomas Ashhurst @TomAsh_1
1K Followers 2K Following Senior Scientist @SydneyCytometry: cytometry, single-cell & spatial multiomics, systems immunology. Interests in 🫁 & 🧠 infections 🦠, paediatric immunology.
سلطان البلو... @SultanFAlbalawi
621 Followers 3K Following Charms strike the sight, but merit wins the soul
Michael L Kaufman @ML_Kaufman
143 Followers 387 Following Informatics Fellow, RNA Bioscience Initiative @rnabio CU Anschutz, PhD in Cell, Stem Cell, and Dev Bio @CUAnschutz Formerly @Kohn_Lab @Brzezinski_Lab
Prapti Mody, Ph.D. @Papu_Sci
319 Followers 487 Following Scientist • Science Communicator • Nature lover • Bookworm • Photographer • ☆ The brain is the ultimate unfathomable universe ☆
Jakob Woerner @jakob_woerner
155 Followers 277 Following Genomics and Computational Biology PhD Student at UPenn 🧬
Steven Kleinstein �... @skleinstein
2K Followers 1K Following Computational immunologist @YaleMed; B cell receptor sequencing analysis, https://t.co/IDRWEUaBIA + multi-omics signatures of infection, vaccination, autoimmunity
Ricardo O. Ramirez Fl... @roramirezf94
625 Followers 696 Following 🇲🇽 Scientist @saezlab in @emblebi studying the molecular biology of multicellular disease processes ⌾ @lcgunam @UNAM_MX @UF @UniHeidelberg alumni
Guillaume Cabanac ⟨... @gcabanac
5K Followers 1K Following ‘Deception Sleuth’ #Nature10 Scientist https://t.co/xXL3Dnb4ZI • CS Prof. @UT3PaulSabatier @InstUnivFr • Scientific Text Mining • https://t.co/7r0v4aXR0o
KΔGE INVΞSTS 影 @1nvestmentKage
160 Followers 2K Following hidden in the village of gains | a flexible weeb who enjoys finance, lifting, poetry, pokemon and learning japanese | documenting the journey
Jan Lause 🟦 @janla... @JanLause
650 Followers 1K Following data science PhD student 🧬🧠🖥️ scRNA data, retina & brain | sci-comm 🤖❤️🌍 AI & sustainability | easily sidetracked by small details in plots & birds 📈🔍🦜
Casey Greene @GreeneScientist
8K Followers 2K Following Chair of @CUBiomedInfo; @CUMedicalSchool. https://t.co/sYjdsEOBZ4 / https://t.co/JxSlN1dd3J / Views mine, not employer's.
ShorterLab @ShorterLab
13K Followers 7K Following Countering deleterious phase transitions in ALS/FTD, PD, AD, and related disorders @Penn @PennMedicine @bb_upenn @BMBGGUPENN @PGGUPenn @PennNGG @CAMBUpenn
Chante Bethell @cjbethell
23 Followers 24 Following
Penn Medicine @PennMedicine
37K Followers 2K Following We are dedicated to the highest standards of patient care, education and research. Please allow up to 24 hours to reply to @ messages. https://t.co/ywUzQ9yGf3
Fairy God-Tech @fg_tech
42 Followers 164 Following It matters how we use our technology. There's a right way and a wrong way.
Dartmouth Cancer Cent... @DartmouthCancer
2K Followers 774 Following Dartmouth Health includes its Dartmouth Cancer Center, one of only 51 National Cancer Institute-designated Comprehensive Cancer Centers in the nation.
Geisel Genetics @GeiselGenetics
18 Followers 11 Following
Geisel School of Medi... @GeiselMed
5K Followers 389 Following Official X/Twitter feed of Dartmouth’s Geisel School of Medicine.Trends for United States
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