Shreejoy Tripathy @neuronJoy
Assistant Prof doing bioinformatics and computational neuro at @UofT and @CAMHresearch. Tweets about neurons, ephys, and single-cell RNAseq. triplab.org Toronto, Ontario Joined February 2009-
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@CAMHnews @BrainCanada This funding is for a mighty team of us - @briankalishMD @neuronJoy & @Rominagl4. We have already started with Romina hard at work in the lab long hours. Grateful for the funding & the great team we have assembled including the newly recruited @Shahrzadghs
Check out our latest implementation of GoT-Splice, now at @STARProtocols! ✂️🧬GoT-Splice🧬✂️ profiles genotype, gene expression, surface markers, and splicing ... all within the same #singlecell! star-protocols.cell.com/protocols/3378… @CellStemCell publication (🧵👇): doi.org/10.1016/j.stem…
Check out our latest implementation of GoT-Splice, now at @STARProtocols! ✂️🧬GoT-Splice🧬✂️ profiles genotype, gene expression, surface markers, and splicing ... all within the same #singlecell! star-protocols.cell.com/protocols/3378… @CellStemCell publication (🧵👇): doi.org/10.1016/j.stem…
Single-cell genomics and regulatory networks for 388 human brains biorxiv.org/content/10.110…
I'm really excited to work on one of these projects with @LiisaGalea and @briankalishMD! Thanks so much @BrainCanada for the support and I can't wait to dive into this project with you all!
I'm really excited to work on one of these projects with @LiisaGalea and @briankalishMD! Thanks so much @BrainCanada for the support and I can't wait to dive into this project with you all!
Want to join a dynamic team studying the electrophysiology of the human brain? Consider applying for our Clinical Research Coordinator I position in the @neuron2brain Lab @KBI_UHN @UHN . Click below and submit your application!! glassdoor.ca/job-listing/cl…
THIS FRIDAY! Learn from the past with @TerenceKeel, explore the present with @KcD_PhD & @TheRealDrDukes, and help chart a diverse, inclusive future with keynote, @phdgprotein86. We can't wait to introduce our guests to the @uoftmedicine community! RSVP: tinyurl.com/5xk6z7p9
One of my favourite women in Science, Nickie Safarian, a PhD graduate from my lab, told me today that she co-authored her first (hopefully of many) paper in Nature Communications. Great work. Go strong! doi.org/10.1038/s41467…
I'm super excited to be part of this paper in @NatureComms, led by @EricaYScott and @Faiz_Lab, that uses multiple omics technologies to map the responses of astrocytes following stroke. nature.com/articles/s4146…
(1/n) 🔬Segmentation errors messing with your cell types in spatial expression assays? Happy to introduce STARLING, our new method for clustering spatial data while accounting for imperfect segmentation 📜biorxiv.org/content/10.110… ⬇️ Short thread
I'm super proud of this work on decoding the genetic basis of structural connectivity, led by @michaelwainberg in collab with @ColinHawco's group, now out in @NatureComms! nature.com/articles/s4146…
It is interesting that UMAP seems to dominate the discussion of methods in single cell data--personally, I am way more worried about pseudoreplication issues...
New updates to MapMyCells! 🗂️ File size limit increased to 4GB (previously 500MB). For logged-in users, limit is now 40GB. 📩 Opt-in email notifications when mapping is complete. MapMyCells: knowledge.brain-map.org/mapmycells/pro… Full release notes: community.brain-map.org/t/mapmycells-u… #OpenScience
Integrating single-cell and spatially resolved transcriptomic strategies to survey the astrocyte response to stroke in male mice🫶 nature.com/articles/s4146…
attending CAN 2024 in vancouver? save may 19 for the inaugural "neural circuits and behaviour" satellite meeting that @Franklandlab and i are co-hosting! superb line up of speakers & we'll be looking for trainees to present! registration to open in march can-acn.org/meeting-2024/s…
Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex biorxiv.org/content/10.110…
if you give terrible startups to your new faculty you don't care about research
Would you expect that PIEZO2 being expressed in a DRG sensory neuron makes that neuron fairly likely to be responsive to mechanical stimulation?
CHRNA5 links chandelier cells to severity of amyloid pathology in aging and Alzheimer’s disease rdcu.be/dya6m @Transl_Psych #rosmap investigation by Jonas Rybnicek aka @Knedlajz2 of @LambeLab with amazing collaborators @neuronJoy and @DanielFelsky (1/5)
🧬Faculty Job Post (Assist. Prof. TT)🧬 Join us in Molecular Genetics @UofT. The search is thematically broad and looking for innovation for the future of #genetics. 🦠Please RT / Pass along the info🍄 #Genomics #PostDoc @DonnellyCentre @MoGen_Grad jobs.utoronto.ca/job/Toronto-As…
Kording —-& Lab �.. @KordingLab
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178 Followers 369 Following PhD Candidate; Neuroscience University of Alberta @PlemeLab account handlerCyprus Biological Soc.. @CyBioStweets
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547 Followers 866 Following Assistant Professor @trentbiology | Mom | Stem cells, muscles, inflammation & aging (She/her)Kording —-& Lab �.. @KordingLab
42K Followers 4K Following Konrad kording, @Penn Prof, deep learning, brains, #causality, rigor, https://t.co/tTJW05RjpC, https://t.co/qf7ZHxiCUt, Transdisciplinary optimist, Dad, Loves outdoors, 🦖Kay M Tye PhD @kaymtye
32K Followers 993 Following Mom. Neuroscientist. She/Her. BLM. https://t.co/sN3wqA9sHH https://t.co/GgqdGIyJwiDr. Liisa Galea @LiisaGalea
10K Followers 3K Following Mom, Neuroscientist, Scientific Truth Advocate. CAMH, Treliving Family Chair, U Toronto, Pres OSSD, Ed FIN, Women's Health Cluster She/her #BlackLivesMatterAllen Institute @AllenInstitute
64K Followers 3K Following The Allen Institute is committed to solving mysteries of bioscience — researching the unknown of human biology, in the brain, the cell and the immune system.Andrew Pruszynski @andpru
11K Followers 3K Following Associate Professor, @westernuPandP. Co-director, https://t.co/f66WHJ2pgV. Co-director, @wusmsl. Comments my own.Marina Picciotto @MarinaP63
14K Followers 1K Following Yale Interdepartmental Neuroscience Program Director, SfN president, nicotinian and Iso's momJibran Khokhar @DrJKhokhar
10K Followers 5K Following @queensu/@UofT/@Dartmouth→@UofG→Associate Professor and CRC (Tier II) in Translational Neuropsychopharmacology @WesternU @SchulichMedDent @westernuACBNature Neuroscience @NatureNeuro
407K Followers 268 Following News, commentary and research coverage from the international monthly journal publishing the highest quality of work in all areas of neuroscience.Ishmail Abdus-Saboor @IshmailSaboor
21K Followers 2K Following We study the skin-brain axis for pleasure & pain | Associate Professor @Zuckermanbrain @Columbia_Bio | Freeman Hrabowski Scholar @HHMINEWSAristotle Voineskos @AVoineskos
3K Followers 2K Following Vice-President, Research & Director, Campbell Family Mental Health Research Institute @CAMHnews. Professor #TemertyMed @uoftmedicine Health, Family, Education.Tony Zador @TonyZador
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36K Followers 2K Following Picower Professor of Neuroscience at MIT https://t.co/UoEeD2FzEY https://t.co/GJDAccXAW8 https://t.co/my1do6xTn1Dr Becca, PhD 🐘 @doc_becca
12K Followers 1K Following dry shampoo convert | cocktail enthusiast | neuroscience PI | SABV influencer | urban gardener | drum learner | she/her @docbecca.bsky.socialCaroline Menard @caromenard666
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10K Followers 2K Following Associate Professor at Harvard & Kempner Institute. Applying computational frameworks & ML to decode multi-scale neural processes. Marathoner. Rescue dog mom.Adam J Calhoun @neuroecology
19K Followers 1K Following I can't imagine smells. Neuro, ecology, behavior, punctuation art. Now: @Meta @RealityLabs, ML for neural interfaces. Prev: @Princeton @SalkInstitute @IntelMackenzie Mathis, PhD @TrackingActions
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14K Followers 3K Following 🇿🇦🇳🇿🇺🇸Neuroscientist @UUtah. Molecular mechanisms of memory, repurposed transposons, and virus-like intercellular signaling.Massih Moayedi — م.. @massihmoayedi
2K Followers 3K Following Franco-Canadien-Iranian. Associate Prof & @UofTPain Pain Scientist, @UofTDentistry. Co-Director, @PainUofT. fMRI, EEG, Psychophysics. He/Him/His | 🏳️🌈|✊🏾|🍉Rob Gereau @robgereau
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871 Followers 323 Following Basic Research & Therapeutics Laboratory focused on delineating neural circuits for Persistent Pain and Parkinson's Disease. @US_ASP @Pitt_brain @PainresforumDániel Barabási @bdanubius
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357 Followers 151 Following Developmental Neurobiologist ! Interested in cell diversity and cortical interneuron Assistant Prof & Group Leader @CBD_VIBDongze He @DongzeHe
119 Followers 106 Following PhD student in Computational Biology at UMD Professional bug makerGairdner Foundation @GairdnerAwards
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435 Followers 661 Following Geriatric Psychiatry Resident @UofTPsych. Interested in addictions, dementia, older adult care.Kristin Cleverley @ClevKristin
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178 Followers 369 Following PhD Candidate; Neuroscience University of Alberta @PlemeLab account handlerApril Rose @DrDrAprilRose
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2K Followers 1K Following My lab conducts research on developmental origins of health & disease▫️Believe a healthy start to life is a right we all share ▫️ Value fundamental science▫️Lauri Tuominen @Laurijohannes
770 Followers 2K Following Neuroscientist, aspiring Canadian, chess enthusiastArkady Khoutorsky @AKhoutorsky
534 Followers 359 Following Neuroscientist at McGill, studying pain & brain disordersArjun Balachandar �.. @ArjBalachandar
223 Followers 631 Following Neurology resident @uoftneurology/@uoftmedicine. 🧠, movement disorders, neuromodulation, AI/ML, amateur drone enthusiast 🏔 @NIRVEUofToronto co-lead 🇨🇦Tulip Marawi, MSc🌷 @TulipMarawi
1K Followers 2K Following Incoming Clinical Psychology MA/PhD student @UTSC 🧠 | Clinical RA @Sunnybrook | MSc @uoftIMS | Passionate about teaching & mentorship | 🇸🇾Harpreet Kaur @Hkaur_p
282 Followers 686 Following Destigmatizing drugs through scientific research | VP Research @PharmAlaBiotech | previously: @Tilray, @sparcltd |@WesternU & @ICTMumbai1933 AlumDr. Stephanie Wales T.. @stephcellsci
547 Followers 866 Following Assistant Professor @trentbiology | Mom | Stem cells, muscles, inflammation & aging (She/her)Narsimha Pujari @Xtal_NP
306 Followers 830 Following @USaskHealthSc @USask @WCVMToday. Ph.D. student. Energy metabolism & Drosophila brain. Crystallography studies of psychiatric risk proteins. Leung lab. He/Him.Soheila Karimi-Neural.. @KarimiLab
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653 Followers 604 Following Interested in chronic pain | Assistant professor @McGilluArezu Jahani-Asl @JahaniArezu
680 Followers 267 Following Canada Research Chair & Assoc. Prof. @uOttawaMed @uOttawaBMRI; Adj. Prof.@McGillMed; Aff. investigator @OttawaHospital, @LDI_ILD.; BRE @eLife; Alum. @harvardmedKatie Cockburn @katie_cockburn
709 Followers 564 Following Assistant Professor @McGillBiochem and @McGillGCI. Stem cell biologist using intravital imaging to understand how tissues regenerate.Kacey Prentice @KaceyPrentice
453 Followers 208 Following Assistant Professor at the University of Toronto, Department of PhysiologyGuang-Zhong Wang @GZWangLab
656 Followers 5K Following Professor at SINH, Chinese Academy of Science. We are engaged in the large-scale data integration of brain and circadian systems biology.Vincent Bonin @BoninLab
672 Followers 610 Following Neuroscientist @__NERF | @VIBLifeSciences | @leuvenbrainins1 | Dept. Biology, KU Leuven. Opinions are my own. RT is no endorsement.Julia Tomasi, PhD @JuliaTomasi20
134 Followers 133 Following Innovation Postdoctoral Fellow @Novartis | PhD @UofT and @CAMHnews in anxiety, genetics, wearables, and virtual reality@CAMHnews @BrainCanada This funding is for a mighty team of us - @briankalishMD @neuronJoy & @Rominagl4. We have already started with Romina hard at work in the lab long hours. Grateful for the funding & the great team we have assembled including the newly recruited @Shahrzadghs
Cerebellar regions interconnected with the prefrontal cortex play a causal role in reward-based learning of visuomotor associations! Collaborative work with Naveen Sendhilnathan, @playa_meg, and Peter Strick @Pitt_Brain. Out in @NatureComms nature.com/articles/s4146…
A huge congratulations to Dr. Liisa Galea (@LiisaGalea), Treliving Family Chair in Women's Mental Health at CAMH and the Scientific Lead for CAMH’s #womenmind™ initiative for receiving this important @BrainCanada funding! 🎉
@BrainCanada is proud to announce the recipients of the Basics of Better #MentalHealth Program. Congratulations to Dr. Stephanie Borgland, Dr. Liisa Galea, and Dr. Susan George! 🎉 To learn more about the program & the projects➡️braincanada.ca/announcements/…
Just finished teaching another semester of genomic #datavisualization 🥳 Discover the awesome #dataviz made by students in the class for various #singlecell #spatialtranscriptomics data Check out the course notes + #Rstats code to explore for yourself: jef.works/genomic-data-v…
sccomp - Outlier-aware and count-based compositional analysis of single-cell data github.com/stemangiola/sc…
Last day @bcm_neurosci after an incredible 15+ yrs. Immensely thankful to our brilliant students, postdocs, staff, collaborators, and colleagues. Next up: @Stanford! Thrilled for new adventures and collaborations in the Bay Area as we unlock the secrets of intelligence!
Check out our latest implementation of GoT-Splice, now at @STARProtocols! ✂️🧬GoT-Splice🧬✂️ profiles genotype, gene expression, surface markers, and splicing ... all within the same #singlecell! star-protocols.cell.com/protocols/3378… @CellStemCell publication (🧵👇): doi.org/10.1016/j.stem…
Want to link clonal mosaicism and disease genotypes to alternative splicing phenotypes in human samples? Have no fear, we've got a new single-cell multi-omics method just out in @CellStemCell for you: ✂️🧬GoT-Splice🧬✂️ Free link: authors.elsevier.com/c/1hat96tu0Cm5… 🧵👇:
Nice to see this scRNA-seq study of ALS/FTD published by @manoliskellis and colleagues. Many findings consistent with our 2023 paper on C9orf72-associated ALS/FTD with @DrachevaStella and Junhao Li (alas, not cited here 🙄) sciencedirect.com/science/articl…
"Harmony is the only method we can safely recommend using when performing batch correction of scRNA-seq data." This matches nature.com/articles/s4158… and my own experience.
Batch correction methods used in single cell RNA-sequencing analyses are often poorly calibrated dlvr.it/T4Py81
Thank you @BrainCanada This is an exciting collaboration with @FerrarioLab Marie-Eve Paquet, Rochelin Dalangin, Stephanie Fulton, and Xiaochen Bai Stay tuned!
@BrainCanada is proud to announce the recipients of the Basics of Better #MentalHealth Program. Congratulations to Dr. Stephanie Borgland, Dr. Liisa Galea, and Dr. Susan George! 🎉 To learn more about the program & the projects➡️braincanada.ca/announcements/…
Grateful to this amazing team and our #Epilepsy patients for supporting our explorations into what makes human brain cells human and the changes in them that result in generating seizures. @moradi_homeira @MadeleineFalby Mandana Movahed.
Introducing the @neuron2brain Wet Lab team! This team supports and raises awareness within the epilepsy community everyday through their research. 💜 #EpilepsyAwareness #Epilepsyresearch
Thank you to @BrainCanada ! We can’t wait to dig into the work with @neuronJoyand @briankalishMD @Rominagl4. I am so excited to see research funding opps that prioritise research in sex-specific factors of mental health! ❤️🙏🏼@womensbrains @KrembilF @ErikaLegacy & Power Corp
@BrainCanada is proud to announce the recipients of the Basics of Better #MentalHealth Program. Congratulations to Dr. Stephanie Borgland, Dr. Liisa Galea, and Dr. Susan George! 🎉 To learn more about the program & the projects➡️braincanada.ca/announcements/…
Single-cell genomics and regulatory networks for 388 human brains biorxiv.org/content/10.110…
Was a treat to host you at UBC @ardemp. I had a lot of fun showing you around - and showing you off! Super proud science sister!
I had a great time in Vancouver during my recent seminar at @UBC. One of the highlights was catching up with @ShernazBamji. We were both postdocs in Lou Reichardt’s lab. It’s always special to reconnect with people you trained with.
Reminding tomorrow Western Bioinformatics Seminar 11:00am - 12:00pm on Wednesday/March 20 at: westernuniversity.zoom.us/j/97643020641
Western Bioinformatics Seminar 11:00am - 12:00pm on Wednesday/March 20 at: westernuniversity.zoom.us/j/97643020641, @VPRWesternU, @WesternU,@SchulichMedDent, @WesternUBiochem, @WesternUMNI,@WesternUACB, @WesternUPaLM,@WesternUPandP,@WesternUepibio,@WesternU_CTCR,@Western_MDPhD,@WesternUScience
Yesterday a huge leap to advance women’s mental health research: an alliance between @ResearchonWH #womenmind @CAMHnews with funding from @Manulife Together-with our >570 members across 29 countries - we can & will make a difference to advance women’s health research!
We’re also honoured to share that we are receiving a $1M-donation from @Manulife to fund our operations for the next 3 years! We are deeply grateful to Manulife for this opportunity and are excited to work with them 🙏🏻 ➡️ bit.ly/43q62iU
Excited to be part of this incredible work by @SpinalCordMark and @VAbraira, out now in @NeuroCellPress! 🎉 authors.elsevier.com/c/1iiye3BtfH99… In this work, @laurmedlock uses a network model to show how PV+ inhibitory neurons in the deep dorsal horn gate cutaneous-evoked muscle activity.
In anticipation of this article appearing online in @PAINthejournal (should be any day now) we have made the data available on Pennsieve at discover.pennsieve.io/datasets/384 @asta_at
RNA isoform expression landscape of the human dorsal root ganglion (DRG) generated from long read sequencing biorxiv.org/cgi/content/sh… #biorxiv_neursci
#ProudPI moment! The Wilson Pregnancy Lab’s first MSc student, Mel, presenting her first poster at the @McMasterU MedSci Research day today! Be sure to drop by and learn about changes in DNAm from placentas with and without IVF conception!
Contribute to the methods collection by JoVE Guest Editors @mdvesely from the @YaleMed and @tcelltracker from the @UMassChan, who is curating a collection on the methods for Basic and Translational Research in Skin Diseases. Add contribution: hubs.ly/Q02pB2rz0