Jose Espinosa @helicobacter1
Bioinformatician in @CRGenomica Cerdanyola Joined May 2011-
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😎 And if you are interested, in protein structure prediction I'll be presenting the @nf_core proteinfold pipeline 📌 fosdem.org/2026/schedule/… #fosdem26 #fosdem #bioinformatics Come join us!🙌🍏
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📣 If you are at #fosdem do not hesitate to come to the #bioinformatics track! 👉 fosdem.org/2026/schedule/… Júlia Mir Pedrol and Nicolas Vannieuwkerke will introduce the @nf_core project fosdem.org/2026/schedule/…
Jose Espinosa retweeted
Are you using nextflow? Would you like to join its community? Jose Espinosa @helicobacter1 will present "Empowering Bioinformatics Communities with nf-core" at the #BOSC Bioinformatics Open Source Conference part of #ISMBECCB2025 iscb.org/ismbeccb2025/p…
Jose Espinosa retweeted
L'arc de Sant Martí d'avui sobre Barcelona vist des del Tibidabo
Jose Espinosa retweeted
I always thought Java was older 🤯
Jose Espinosa retweeted
2024 is 54.75% complete. [165 days remaining]
Jose Espinosa retweeted
Pipeline release! nf-core/reportho v1.0.1 - nf-core/reportho v1.0.1! Please see the changelog: github.com/nf-core/report…
Jose Espinosa retweeted
Publicat a #nargab doi.org/10.1093/nargab… l’article que descriu la Iniciativa Catalana per l’Earth Biogenome Project (CBP) @CatBiogenoma @EBPgenome @erga_biodiv Des de l'article original es pot accedir a la traducció catalana zenodo.org/records/127228…
Jose Espinosa retweeted
This is a really important episode for any @nextflowio developers 📣 We discuss new and upcoming Nextflow syntax changes, with examples and discussion about how it will affect pipelines. We want feedback before the syntax becomes final, so please let us know what you think!
Join us for Episode 41 of the 🎙️ #Channels #Podcast! Dive into @nextflowio 24.04 updates with @tallphil and Ben Sherman. We chat about topic channels, eval outputs, and the publishDir replacement: workflow output definitions. We want YOU to try them out! x.com/i/broadcasts/1…
We release nf-core/proteinfold 1.1.0! The pipeline can now run Alphafold in split mode (MSA separated from prediction) and deploys ESMFold. Thanks a lot to all the people who contributed to this release, especially @ath_baltzis who was the first maintainer of it.
Pipeline release! nf-core/proteinfold v1.1.0 - nf-core/proteinfold v1.1.0 - Copper Deer! Please see the changelog: github.com/nf-core/protei…
Jose Espinosa retweeted
🎉 Introducing nf-core office hours 🎉 We are thrilled to introduce nf-core office hours, weekly drop-in sessions designed for nf-core developers seeking an opportunity to connect, chat, and work together.
Jose Espinosa retweeted
Very happy to announce that all @nf_core pipelines will now be automatically added to #WorkflowHub for greater visibility in the wider bioinformatics community🎉 Many thanks to the WorkflowHub team for building this scraping infrastructure for us 🤝🏻 workflowhub.eu/projects/15/wo…
Jose Espinosa retweeted
A huge THANK YOU to our current ambassadors for their incredible work and dedication. We can't wait to see the new ideas and initiatives the next cohort will bring! Together, let’s continue to build a stronger, more dynamic Nextflow community. 🌐❤️
Jose Espinosa retweeted
A treasure trough for reproducible bioinformatic pipelines in livestock genomics: bit.ly/4biKW9e. Thanks to all colleagues in @EuroFaang, particularly @BovReg ! Also have a look from neighbouring disciplines, e.g. vet medicine @Loeffler_News
Jose Espinosa retweeted
First, the nf-core / EuroFAANG paper 🎉 x.com/strnr/status/1…
Empowering bioinformatics communities with Nextflow and nf-core biorxiv.org/content/10.110…
Jose Espinosa retweeted
It's been a big week! What I'm reading this week in bioinformatics, synthetic biology, single cell omics, population genetics, microbial genomics, … 🧬🖥️🧵
Jose Espinosa retweeted
what differentiates your bioinformatics tool is the community: Empowering bioinformatics communities with Nextflow and nf-core biorxiv.org/content/10.110…
Jose Espinosa retweeted
Can AlphaFold model large RNA structures? I attempted to model the structure of an intron that was released today: rcsb.org/structure/8K0Q
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