(Fred)erick Matsen @ematsen
I ♥ evolution, immunology, math, computers, & working at @fredhutch @HHMInews. But none of that matters if we can't quickly get to #netzero carbon emissions. matsen.group Seattle Joined August 2010-
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Does anyone know if @GISAID registration has stopped? Two key folks in my group requested a registration in January. They have sent emails via the contact form and I have too. No response. This is slowing us down: coders have to hand off code to people with access. 🫤
Jeremy Beaulieu (U Tennessee) and Brian O'Meara (U Arkansas) will be giving the next talk in our sequel series on birth-death identifiability on Tuesday, February 21 at 9:00 AM PST with a talk entitled "Diversification analyses: what can we do, and what should we do?"
For interested parties, I've made a PCA of the @fredhutch computational biology faculty... it's a fantastic group! 🧪: small wet lab 🧪🧪: big wet lab.
For interested parties, I've made a PCA of the @fredhutch computational biology faculty... it's a fantastic group! 🧪: small wet lab 🧪🧪: big wet lab. https://t.co/53g2cOCpRv
We're recruiting a new faculty member @fredhutch! We're looking for researchers who use data and data science in new and creative ways. All research areas are welcome, from ML/AI to cancer genomics to tech dev to other topics. apply.interfolio.com/115753
Another awesome crop of high school and undergrad interns this year, making real contributions to our work on large-scale Bayesian phylogenetic inference, viral evolution under cross-immunity, and germinal center simulation/inference.
Huge congratulations to Dr. @wsdewitt for a beautiful thesis defense! I'm going to miss the heck out of you: for your rigorous thought, your love of science, and balanced perspective. You have an amazing career ahead of you... 🎸🚀🤘
B cell receptor deep sequencing data now often includes info on the heavy/light chain pairing that makes up each antibody. Great if you're synthesizing abs -- don't have to guess. Here we show that it can also improve clonal family clustering arxiv.org/abs/2203.11367
I'm excited share our "synthetic intron" technology for selective expression of therapeutic proteins in cancers, just out in @NatureBiotech. This was an amazing collaboration with @AbdelWahablab led by @khrystyna_north and @SBenbarche nature.com/articles/s4158…
Our lab @fredhutch is #hiring a Research Technician to work on projects to study #antibody responses to #flaviviruses and to help manage lab operations. Please retweet. careers-fhcrc.icims.com/jobs/21810/res…
This is a dream come true: a leading researcher who is ready to take the reins for data at @fredhutch, who cares about the full range of needs from education to infrastructure, and who has shown their commitment to advancing DEI.
This is a dream come true: a leading researcher who is ready to take the reins for data at @fredhutch, who cares about the full range of needs from education to infrastructure, and who has shown their commitment to advancing DEI.
Fred Hutch Computational Biology is gearing up to host a bunch of undergraduate interns this summer. If you are an undergrad interested in the intersection of 💻and🧬, or if you know one, please check it out! SURP is a phenomenal experience.
I am so excited about this! Rob's brilliance in both the wet and dry domains will enable opportunities for everyone at @fredhutch to up their data science game.
I am so excited about this! Rob's brilliance in both the wet and dry domains will enable opportunities for everyone at @fredhutch to up their data science game.
Harmit S. Malik @HarmitMalik
44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/himLior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatterJoshua G. Schraiber�.. @jgschraiber
8K Followers 8K Following Evolution, statistics, software, slacktivism. Once left a tenure track job, but trying to get one again. @docedge85 and @mwpen pay my billsVince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsMichael Eisen @mbeisen
77K Followers 15K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/bZ7I9oSJe0.Bloom Lab @jbloom_lab
48K Followers 1K Following Lab studying molecular evolution of proteins and viruses. Affiliated with @fredhutch @HHMINEWS @uwgenome. @jbloomlab@bskyKevin K. Yang 楊凱�.. @KevinKaichuang
16K Followers 5K Following Senior Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼Dmitri Petrov 💔 @PetrovADmitri
15K Followers 4K Following Evolutionary Biologist at Stanford. Rapid Evolution, Adaptation, and Genomics. Open Science advocate.Liam Revell @phytools_liam
9K Followers 2K Following Evolutionary biologist, R developer, & occasional heterodox. Tweets mostly about phylogenetics... but sometimes speech, the academy, politics, & COVID.Sergey Ovchinnikov �.. @sokrypton
12K Followers 3K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologistAndrew Kern @pastramimachine
15K Followers 4K Following Evolution, population genetics, machine learning. rhythm section. he/himPaul G Thomas @PGTimmune
5K Followers 3K Following Department of Host-Microbe Interactions, St. Jude Children's Research HospitalDaniela Witten @daniela_witten
49K Followers 754 Following dorothy gilford endowed chair and prof of stat/biostat @uw. all views my own.Graham Coop @Graham_Coop
20K Followers 3K Following Popgen @UCDavis. @[email protected] . Tweets, grammar, & spelling are my views only.He/him. #OA popgen book https://t.co/R6I2dcaEGfVictora Lab @victora_lab
5K Followers 610 Following Laboratory of Lymphocyte Dynamics at @RockefellerUniv. Opinions are Gabriel’s own. @victora.bsky.socialVignuzziLab @VignuzziLab
16K Followers 9K Following viruses-evolution-Singapore-fitness! @idlabs_astar. #PrideInSTEM 🏳️🌈 #DiversityInSTEM 🇸🇬🇮🇹🇨🇦🇫🇷🇺🇸🇸🇦🇬🇧🇭🇺🇲🇾Theo Sanderson @theosanderson
14K Followers 1K Following Scientific researcher in pathogen genetics. Previously: @GoogleAI, @sangerinstitute 🧪 🤖 🖥️ @[email protected] / @theo.io on blueskyDuncan MacCannell @dmaccannell
6K Followers 898 Following Molecular epi and public health. Pathogen genomics, clin micro, AMR, (bio)tech and open data. Personal account. Opinions/dad jokes are my own. 🔬🦠🧬😷💉🌻🦣🍩GreiffLab 💻🔬�.. @victorgreiff
5K Followers 5K Following Computational and Systems Immunology Lab @UniOslo. Immune receptor profiling | Machine learning | Antibody engineeringMichael Love @mikelove
18K Followers 5K Following I'm not on twitter anymore, find my on Bluesky or MastodonAyọmikun Akinrinade.. @ayomikunoa
1K Followers 1K Following ai-yo-mee-ku(n) 🐠🐟 Incoming @uwgenome PhD | Studying historical processes and modern diversity for M.S. @UCIEEB | B.A. Public Health @UWBothell | FHL REU 2021Mirco J. Friedrich @mircoscopy
366 Followers 94 Following Physician Scientist with Feng Zhang @broadinstitute & @MIT | @EMBO Fellow Decoding and engineering human immunity | 🇩🇪🇫🇷🇪🇺🇺🇸Lync @Lyncbywatts
1K Followers 1K Following Advanced, innovative compact solutions for commercial hot water/water quality, including Aegis CO₂ heat pump water heater (COP of 5.0+, GWP of 1).Sidney Paige @SidneyPaig225
76 Followers 2K FollowingJoao Ascensao @jaascensao
180 Followers 338 Following Grad student @ UC Berkeley with @ohallats | Dynamics of microbial ecology & evolution | @[email protected]Tasishee @tasishee46322
49 Followers 2K FollowingFinance Jimmy @FinanceJim69420
50 Followers 338 FollowingJOURNAL OF MUCOSAL IM.. @research52518
102 Followers 936 Followingashley white @ashleywhit95814
6 Followers 63 FollowingDeco La legende @DecoLegend64894
55 Followers 122 FollowingVivek Sriram @viveksrm24
299 Followers 945 Following Clinical Data Scientist @FredHutch DaSL | @PennMedicine PhD, @Wharton Statistics, @DukeU alum | Bioinformatics, Health ML | Dog dad 🐕 and #Survivor fan 🌴Riyadh | Health @Riyadh1Health
200 Followers 3K Following #secure in your property, #healthy body, & day #food, it is as if the whole world were brought to you. — Riyadh (on #X since 2008) Old clinic owner.Anne Hahn @kuriosera
611 Followers 1K Following 🧬🦠 Infectious Diseases & Immunology🔬@YaleSPH👩🏼🎓@UniFAU @LSHTM 🔄 @y_efis @iuis_junior #PlanetaryHealth #sciencemattersYunshu @Yunshuyang01
51 Followers 93 Following 🌸 | Curator of dreams and collector of memories. | Embracing imperfections with a touch of grace. 💫 | Powered by coffee, kindness, and a sprinkle of sass. ☕️Tom Andrews @0bj3ctivity
6K Followers 6K Following See the wood for the trees. @[email protected] Also on Spoutible & PostGiknop @giknop80273
60 Followers 1K FollowingPhinnah Tyez @AtyeirwotR
126 Followers 398 FollowingRony Islam @RonyIslam141285
16 Followers 46 Following "The difference between the impossible and the possible lies in a man's determination."Patience @Patience1672353
0 Followers 33 FollowingNeil Scheidwasser @handahofi
28 Followers 292 Following PhD student @UCPH_Research, previously: @logitech @epfl | (phylo)genetics🧬, deep learning 🖥️, speech processing 🗣️, neuroscience🧠Maud Weest @MaudWeest2009
30 Followers 204 FollowingGeraldene Munsamy @GeraldeneM49733
9 Followers 155 FollowingSishuo Wang @SishuoWang
126 Followers 319 Following computational biologist in dept of microbiol @cuhkmedicine. alumni @ubc, China agric univ. microbial genomics, phylogenetics, probabilistic programmingBabykins Jesse @Babykins239
208 Followers 528 FollowingDavid E. Rebellón-S�.. @David_RebellonS
80 Followers 395 Following MD - MSc Epidemiology | PhD Student - London School of Hygiene and Tropical Medicine | Clinical Researcher - Fundación Valle de LiliAdriana Tomic @TomicAdriana
1K Followers 3K Following Systems immunologist using #MachineLearning #AI to understand human immunity to #viruses #vaccinesGerina smith @JacyEvelyn72690
6 Followers 47 Following Hi I am here looking for serious long term relationshipJuliana @Juliana8551959
50 Followers 96 FollowingKatherine Corn, PhD @damalichthys
2K Followers 2K Following macroevolution, biomechanics, fish -now: Postdoc @virginia_tech -fall '24: Asst Prof @wsupullman + Director, Conner Vert. Museum -past: PhD @PopBioUCD #BLMGordon J. Köhn @gordon_koehn
126 Followers 218 Following trained physicist & biostatistician | embarking into transformative tech soon | MSc Biotech ETH '23; MSc Physics ICL '21Noosoa @Noosoa216985
5 Followers 31 FollowingCécile Tran Kiem @CecileTK_
121 Followers 207 Following Postdoc at @fredhutch on mathematical modelling of infectious diseases.Jiawei Xing 邢嘉威 @jiawei_xing
48 Followers 181 FollowingNaveen Nagarajan @NNaveenutah
625 Followers 5K Following Neuroscience researcher at University of Utah.Gouri Rajaram @GouriRajaram
111 Followers 488 Following Biotech Undergrad @iitkgp. Cancer Systems Biology Research @BSSE_IISc. Intern @fredhutchShing @shingheizhan
902 Followers 713 Following Studying pathogen evolution using computational approaches at Oxford | Views my own | @[email protected]Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatterVince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsBloom Lab @jbloom_lab
48K Followers 1K Following Lab studying molecular evolution of proteins and viruses. Affiliated with @fredhutch @HHMINEWS @uwgenome. @jbloomlab@bskySergey Ovchinnikov �.. @sokrypton
12K Followers 3K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologistPaul G Thomas @PGTimmune
5K Followers 3K Following Department of Host-Microbe Interactions, St. Jude Children's Research HospitalDaniela Witten @daniela_witten
49K Followers 754 Following dorothy gilford endowed chair and prof of stat/biostat @uw. all views my own.Victora Lab @victora_lab
5K Followers 610 Following Laboratory of Lymphocyte Dynamics at @RockefellerUniv. Opinions are Gabriel’s own. @victora.bsky.socialVignuzziLab @VignuzziLab
16K Followers 9K Following viruses-evolution-Singapore-fitness! @idlabs_astar. #PrideInSTEM 🏳️🌈 #DiversityInSTEM 🇸🇬🇮🇹🇨🇦🇫🇷🇺🇸🇸🇦🇬🇧🇭🇺🇲🇾Theo Sanderson @theosanderson
14K Followers 1K Following Scientific researcher in pathogen genetics. Previously: @GoogleAI, @sangerinstitute 🧪 🤖 🖥️ @[email protected] / @theo.io on blueskyGreiffLab 💻🔬�.. @victorgreiff
5K Followers 5K Following Computational and Systems Immunology Lab @UniOslo. Immune receptor profiling | Machine learning | Antibody engineeringTorsten Seemann @torstenseemann
16K Followers 2K Following Microbial genomics, bioinformatics software, training. A/Prof ORCID: 0000-0001-6046-610X Retro 8-bit computers; VIC=20, C=64, C=128.Steven Kleinstein �.. @skleinstein
2K Followers 1K Following Computational immunologist @YaleMed; B cell receptor sequencing analysis, https://t.co/IDRWEUaBIA + multi-omics signatures of infection, vaccination, autoimmunityJay Shendure @JShendure
14K Followers 332 Following Genomics technology developer. Developmental biology adult learner. Professor at @uwgenome @HHMINEWS @BrotmanBaty. He/him.Jian Ma @jmuiuc
7K Followers 1K Following Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science @CMUCompBio @SCSatCMU @CarnegieMellonAdonis Rubio @adonisrubio99
810 Followers 1K Following Immunology PhD Candidate @StanfordMed @barneslab1 | @NSF GRFP Fellow | 🏳️🌈 he/him | 🦠 #cryoEM #antibodies #vaccines #virologyPatrick Kidger @PatrickKidger
9K Followers 192 Following 🧪BioML @ https://t.co/04dWAWzCyl 🧑💻Prev. Google X, Oxford. 📚Neural ODE textbook: https://t.co/ODOKWjub5k 🤖Open JAX ecosystem: https://t.co/8kXzaG9XVfYunlong Richard Cao @yunlong_cao
19K Followers 412 Following Biochemistry & Immunology | Host Immune Response, Antibody Drug & Vaccine Design | PhD @Harvard | Assistant Professor at Peking University BIOPICPatWilsonLab @PatWilsonLab1
181 Followers 360 FollowingRabia Fidan @Rabia_F_
204 Followers 464 Following Bioinformatics researcher @TheCrick Previously @EBIgoldman | @CompEvoMetu | @METU_ODTUPhilippa Steinberg @Miriampippaart
359 Followers 737 Following They • Them || 🏳️🌈🇩🇪 || Integrative Bio & Data Science @UCBerkeley '23 || 1st year PhD student @MCBSeattle @UW || SciArt + SciEd + SciCommBetsabel Chicana, PhD @Betsabel11
532 Followers 386 Following Immunologist 🔬🧬• Mentor • Latina in #STEM • Community college graduate • #FirstGen | (she / Ella)Nídia S. Trovão, Ph.. @nidiatrovao
721 Followers 721 Following Scientist | Phylodynamics | Bayesian inference | Viral evolution | Disease ecology | 🦠🧬🔍🌍⚕️ | #WoCinSTEM | Views are my own | She/HerAngela McLaughlin @AngelaMcLaughin
103 Followers 327 Following PhD student | Viral phylogenetics | Public healthAshni Vora @AshniVora
120 Followers 382 Following Budding scientist 🧬 Collector of little curiosities. PhD student at Rockefeller University 🧪The Ward Lab @WardLab1
3K Followers 259 Following A structural bio lab using electron microscopes to study HIV, Ebola, Flu, Malaria, Coronaviruses, and membrane proteins. Views are our own.Wyatt McDonnell @WyattMcDonnell
1K Followers 2K Following CEO and co-founder of @infinimmune, exploring human immunity 💉🧬👨🏻💻 @tigers fan ⚾️ Views mineAdele Valeria @adele_valeria
386 Followers 522 Following Computational Biology PhD Student @JHUCompSci | BSc (Hons) Biomedical Informatics @EdinburghUni @ZJU_China | #FirstGen | 🇮🇩Lisa Buchauer @LiBuchauer
461 Followers 588 Following Computational biologist, professor of Systems Biology of Infectious Diseases @ChariteBerlin. I like it when the points lie on the line.Andrea Shiakolas, PhD @AShiakolas
224 Followers 432 Following Working on LIBRA-seq and antibody discovery in the @IG_lab 👩🏻🔬 | Double ‘Dore | Views my own.Minkyung Baek @minkbaek
2K Followers 107 Following Assistant Professor @ Seoul National University; machine learning for protein structure/interaction prediction & designMasumi Ueda Oshima, M.. @masumi_ueda
140 Followers 285 FollowingNena Coleman Gray @nenacolemangray
43 Followers 25 Following Senior Recruiting Partner at Howard Hughes Medical InstituteAdam Kucharski @adamjkucharski
143K Followers 2K Following Epidemiologist/mathematician. Co-director of @LSHTM_CEPR and @TEDFellow. Author of The Rules of Contagion. Views own.Thien Tran @ThienTran2002
43 Followers 142 FollowingScott_Boyd_Lab_Stanfo.. @ScottBoydLab
636 Followers 655 Following Scott Boyd Lab for Human Immunology research at Stanford UniversityHelen Chu @HelenChuMD
12K Followers 190 Following Physician scientist @UWMedicine studying flu, RSV, and other emerging respiratory virusesK @strangelykatie
103K Followers 641 Following Eisner, Harvey, McDuffie winning graphic novelist - they/them 🌻 rep'd by @LindaRandom FREE 🇵🇸 🇵🇸 🇵🇸 🇵🇸!!Families For A Future @afuturedotorg
922 Followers 231 Following We are helping parents come together to protect our kids from pollution and global warming. We're #ForAFuture, so our kids can have one.Ellen DeGennaro, PhD @ViolinPlots
658 Followers 2K Following Postdoc w @DanLarremore, PhD from @mit_hst, @Vassar grad. From neuro to epi, these days at ellen-dege at BlueSkyDelphine Depierreux @dm_depierreux
417 Followers 771 Following Postdoctoral Fellow | Virology, immunology | Vaccines advocate | Immune evasion, NK cells, global health, infectious diseases | Aspiring mountaineer 🏔Amitabha “Guppy” .. @16Chromosomes
280 Followers 449 Following Husband, girl dad, #alwaysascientist love learning and talking about science, get to do both @fredhutch, opinions mine.Laila Shehata @lailashehata17
135 Followers 199 Following @UW_Immunology PhD in the Pepper Lab 🌶 Big fan of germinal centers 👩🏻🔬 @NSFGRFP fellow. She/herIvana Mikocziova @immuno_ivana
271 Followers 443 Following Postdoc @BioscienceTurku | @InFLAMES_Health | Immunogenetics | Single Cell Omics @singlecellturku | Bioinformatics | AutoimmunityAnastasia Ignatieva @ana_ignatieva
176 Followers 350 Following Lecturer @UofGMaths_Stats | Population genetics | Previously @OxfordStats @warwickstatsChetan Seshadri @SeshadriChetan
454 Followers 129 Following Proud to be a physician and a scientist. Passionate about T cells and TB.The Ohainle Lab @OhainleLab
509 Followers 12 Following Home of the Ohainle Lab at UC Berkeley MCB, Division of Immunology and Molecular Medicine. Tweets by lab members, opinions our own. PI: @MollyOhainleDr. Amy Baxter @amylizbaxter
257 Followers 508 Following Post-doc in the @WherryLab, 90% immunologist 10% virologist, on the hunt for the most English-style beer in the US. She/her. Views my ownAntoine Koehl @antoinekoehl
180 Followers 346 Following Miller Fellow @UCBerkeley | PhD @StanfordMed | structural biologist interested in GPCRsjeremy freeman @thefreemanlab
5K Followers 3K Following executive director @carbonplanorg. previously: neuroscience and computational biology. open source, open science, collaboration. (he/him)Jakub Otwinowski @JakubOtwinowski
218 Followers 472 Following Computational biophysicist interested in protein engineering + machine learning. Works at dyno therapeutics.Marlin Figgins @marlinfiggins
869 Followers 522 Following Stats/ML for public health and epi/evo | uncertainty quant and principled decision-making | PhD candidate @UW AMATH | Bedford lab @fredhutchLuka Mesin @LukaMesin
902 Followers 242 Following B-cell biologist/immunologist at @RockefellerUniv. Beethoven and be kind.Dr. Sri Narasimhan @Sri_Baqri
3K Followers 2K Following Deputy Editor @CellCellPress. Scientist. Mom. Viruses, Microbes, Immunology, Cancer. Ex @harvardmed @UMassChan @NUSingapore 🇺🇸🇮🇳 தமிழ் #womeninSTEMJazmine A. Snow 🔬 @JazmineASnow
636 Followers 2K Following Second year grad student in the MCB program at UW/ Fred Hutch in Dr. Nina Salama's lab. Interests: pathogen-associated malignancies. She, her, hers.Molly Przeworski @molly_przew
9K Followers 550 Following Evolutionary Geneticist, Columbia UniversitySoHillion @SoHillion
204 Followers 739 Following PhD Immunology @InsermU1227 #Bcell#Autoimmunity @UBO_UnivBrest @CHRU_Brest Visiting Researcher @CUAnschutzBui Quang Minh @bq_minh
592 Followers 117 Following Computational phylogenomics: Enabling evolutionary research in the genomic eraDr. Kate Cooper @KateCooperOMA
210 Followers 767 Following Biomedical informatics, consumer health informatics, science education🌎🧐🔥 she/her. opinions are my own, retweets != endorsements.Corey Welch, PhD @CoreyWelch_STEM
5K Followers 3K Following Director, STEM Scholars Program; Iowa State; Student Success speaker; Biologist; SACNAS Leadership Institutes; Northern◆Cheyenne tribe+1st Gen/Pell; On BlueskyMadhura Rane PhD @mra.. @madhurarane
421 Followers 549 Following Wastewater/ ID epidemiologist at CA DPH. Interested in spatial epi and all things vaccines. Eternal Wodehouse fan. @uwepidemiology @JohnsHopkinsSPH alumMeera Gupta @guptameera94
79 Followers 222 Following Graduate Student, Wuhr Lab, @Princeton University | Proteomics, Bayesian Statistics, Systems Biology l Past @IITDelhi@ematsen I still use this, FYI 💜 Hope you're well!
I'm so excited to announce that I will be starting me own lab at @pennvet in the department of Pathobiology in September! 🎉 Our main scientific goals will be to use genomics to understand the emergence, evolution, and transmission of RNA viruses like H5N1 and SARS-CoV-2.
Really proud of this effort and those who made it happen: Ab repertoire gene usage is explained by IGH genetic variants O. Rodriguez @yana_safonova_ @Will_ig_ab @ScottBoydLab @lissagoingviral @marasco_wayne biorxiv.org/content/10.110…
We have new data on the effects of all RBD mutations to Omicron BA.1 and BA.2 on ACE2 affinity & RBD expression. These data, which are from experiments and analyses by @tylernstarr @AllieGreaney & Will Hannon are available here for viewing and download: jbloomlab.github.io/SARS-CoV-2-RBD…
I got my tenure letter from the university prez, which is great. The mini-view in my email truncates it to "Wright-Ass" and uh, yeah, seen
Any favorite recent studies showing how parameter or ancestral state estimates differ when fitting a model against a Bayesian posterior of trees vs. a single summary tree (e.g. MCC tree)?
Check out the published version of our manuscript where we explore specific trans genetic variants that are associated with T-cell receptor V(D)J recombination probabilities @eLife doi.org/10.7554/eLife.…
Strengthening sanctions, concrete defense assistance and an anti-war coalition have just been discussed with @POTUS. Grateful to 🇺🇸 for the strong support to 🇺🇦!
A grant from @HHMINEWS will be shared by scientists at Fred Hutch and @UWMedicine to explore new avenues of research on the anticipated transformation of #COVID19 from a #pandemic to a more stable endemic disease. @HarmitMalik @trvrb @jbloom_lab @ematsen bit.ly/3LqtGlV
First day on the job @HHMINEWS !!
Serratus is published in @Nature!🎉 Planetary viral discovery by analysis of all available RNA sequencing data. nature.com/articles/s4158…
Estimating the relative proportions of SARS-CoV-2 strains from wastewater samples medrxiv.org/content/10.110…
Reviewing trainee grants is giving me a whiplash going from reading a proposal from an HHMI lab to one from a PUI. Both with great ideas but money makes all the difference in the scale and scope of questions you get to ask. The magnitude of the tilted scales is so disheartening.
Interested in Bayesian inference and phylogenetic trees? Exciting seminar from @ematsen on variational phylogenetic inference at 17:00-18:00 on Wednesday 12 January 2022 UK time. Join here: samoa.dcs.gla.ac.uk/events/viewtal…
Christmas surprise- brother @ematsen being featured in @lakesideschool magazine. All three of us Matsen kids are so indebted to Lakeside. Our teachers there remain household names. Our Papa (UT Austin Prof) would be so proud— your chalkboard equations evoke him.
If we do a very simple 10-day projection of this rate of growth we get ~2100 daily Omicron cases in King County on Dec 22. This is ~3.5 times the Delta peak in King County in August and this is only 1 week away. 11/12
At @UWVirology, we continue to screen positive specimens using SGTF. Confirmation by sequencing usually lags by a few days, but we expect the majority of these SGTFs to be Omicron. If so, definitely seeing a rapid rise similar to reports from South Africa, UK, Denmark, etc.
We identified 3 cases of Omicron at @UWVirology using SGTF, ddPCR and sequencing. Thanks to our incredible team in the lab and to our partners in public health. doh.wa.gov/Newsroom/Artic…
We all want to protect our kids from pollution. But many of us don’t know where to start. That's exactly what polluters want. Here’s what they don’t want you to know: There’s something everyone can do. And you can do it right now. afuture.org/action/talkabo…
Omicron antibody neutralization thread, with preliminary results, and substantial caveats. Most credit to @DannySheward. We’ve been racing to generate neutralization data as fast as possible, and our first results were read this afternoon (1/n).