Release of 8 new genomes of a new lineage of SARS-CoV-2 with > 100 mutations from South Africa. This is probably the most divergence lineage identified this year. In this thread, we highlight some of the characteristics of the new BA.2.X lineage and epidemiology in SA.
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So far, this has been detected from eight samples from three districts in Limpopo and Gauteng provinces (Capricorn, City of Johannesburg and City of Tshwane) between 20 September and 29 November 2023. All eight genomes were sequenced by the NICD from SARS-CoV-2 genomic surveillance (routine diagnostic samples) or syndromic GP-based surveillance (Viral Watch) @nicd_sa