KevinSayers @KevinTSayers
Bioinformatics, HPC, Cloud. AWS Research Scientist in Advanced Computing team. github.com/KevinSayers Joined May 2017-
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KevinSayers retweeted
I'm proud to share that my team is sharing early work to get userspace #Kubernetes running with an #HPC workload manager @FluxFramework on #AWS! arxiv.org/abs/2406.06995 There is more to do, but I'm immensely proud of this work, and grateful for the people I get to work with.🥰
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KevinSayers retweeted
Just announced to the Nextflow community #NextflowSummit
@evobioclio @UBuffalo Bit of an adjustment from Barcelona?
KevinSayers retweeted
The dates for the 2024 #NextflowSummit events in Boston 🇺🇸 and Barcelona 🇪🇸 have been announced 🎉 If you're keen to come and don't want to miss out, you can sign up for updates here: summit.nextflow.io/subscribe-2024/
KevinSayers retweeted
KevinSayers retweeted
.@awscloud unveils @Arm-based #Graviton4 #Graviton4 provides up to 30% better compute performance, 50% more cores, and 75% more memory bandwidth than current generation Graviton3 press.aboutamazon.com/2023/11/aws-un… #Cloud #HPC #AI
KevinSayers retweeted
Attending SC23 in Denver? Join AWS and NVIDIA Tue, Nov 14, 7:30 pm-10:30 pm for the afterburner after-party. Register now. awsxnvidiareception.splashthat.com #iamhpc #sc23 #aws
KevinSayers retweeted
Attending SC23? Visit the AWS booth for deep-dive demos & sessions. Join AWS Tues, 11/14, for drinks & appetizers RSVP awsatsc23.splashthat.com #sc23 #Iamhpc #aws #hpc
KevinSayers retweeted
Exciting Opportunity Alert🚀! Join us at sciCORE as an HPC Linux System Administrator. Dive into cutting-edge research, manage vast HPC environments, and innovate alongside brilliant minds. Ready to make a difference?👉bit.ly/48VOv4j👈#HPC #Linux @UniBasel_en @ISBSIB
If you are doing HPC in AWS or interested in seeing what is possible this is a great new resource!
KevinSayers retweeted
Announcing the latest #AmazonResearchAwards call for proposals, which awards grant recipients unrestricted funds and AWS promotional credits. Learn more about the proposals, deadlines, and how to apply. ⬇️
@kylegiff @PaoloDiTommaso The blog is very light on technical reasons actually. The easier to configure section jumps out at me. Sure Snakemake has simpler config, it also is so limiting it hinders complex workflows. Customizing a Snakemake HPC profile is far less straightforward than in NF.
@nilshomer @LatchBio Only took them 2 days to try to start a flame war too...
@hin175 @mribeirodantas @MorganMarcos Nextflow makes it a lot easier to modify behavior of the entire workflow and is pretty easy to use any scheduler parameters as needed. Snakemake is a little less straight forward but you should easily be able to work with time limits, constraints, and queues for slurm at least.
KevinSayers retweeted
This is the first ever public Advanced Nextflow training workshop. Developed by our Groovy magician @robsyme🧙♂️. If you want to build on your @nextflowio skillz I would highly recommend signing up. Loads of tips/tricks/gotchas about @nf_core / NF pipeline implementations.
📢🧑🎓 Registration is now open for two @nextflowio / @nf_core training events! 📆✍️ 👶🏻 Foundational - Sept 6th - 8th 2023: nf-co.re/events/2023/tr… 🦸🏻♂️ Advanced - Sept 27-28 2023: nf-co.re/events/2023/tr… A perfect warm up for the #NextflowSummit events and @nf_core hackathons! 🎉
A number of highly demanded features in this release!
🎉 #AWS #ParallelCluster 3.6 is out for #ISC2023 Featuring: 💿 RHEL8.7 support 🩺 GPU health checks 🛠️ Custom Slurm configs 🔖 Queue + resource tags 🌤️ CloudFormation support 🔥 Up to 50 queues 💵 Budgeting (!) 🚀 Multiple custom action scripts Read more: docs.aws.amazon.com/parallelcluste…
aws.amazon.com/blogs/industri… New Amazon Omics features including support for @nextflowio accelerator directive for GPUs, and pre-built workflows in Ready2Run.
KevinSayers retweeted
I have been organizing snippets from interesting/not-so-basic #nextflow questions I have answered in the past in the GitHub repository linked below. I hope it's useful for you😉 @nextflowio #workflow #pipeline #bioinformatics #dataengineering #data github.com/mribeirodantas…
@boofla It says high-performance right in the title…HPC here we come 😁
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