Eric Deeds @EricJDeeds
Integrative Biology and Physiology and Institute for Quantitative and Computational Biosciences, UCLA Joined July 2012-
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That's a wrap for the 2024 "Master Class in Teaching Math Modeling for Life Sciences" workshop! Thanks to our instructors, @alan_garfinkel and @EricJDeeds, as well as all the participants who brought lively discussion and unique perspectives to the table! #harvardmath #math
Hey folks, we're repeating last year's successful workshop at Harvard in how to teach modeling and dynamics to undergrad life science students with *no* previous calculus. Please join me, @BmathK, @EricJDeeds and Jennifer Czocher (Texas State) in June.
Join us for a master class in teaching math modeling for life science students. Learn from @alan_garfinkel how to teach dynamics to undergraduates without a calculus prerequisite. June 23 - June 28 More info and register: math.harvard.edu/event/2024-mas… #iteachmath #maa
Join us for a master class in teaching math modeling for life science students. Learn from @alan_garfinkel how to teach dynamics to undergraduates without a calculus prerequisite. June 23 - June 28 More info and register: math.harvard.edu/event/2024-mas… #iteachmath #maa
Our paper with @EricJDeeds is now up on PLoS Comp Bio. Some new goodies since the preprint including an implementation of a generalized form of the branch distance! journals.plos.org/ploscompbiol/a…
I was fortunate enough to spend a week at Harvard with @alan_garfinkel @BmathK and @EricJDeeds learning about this course! Looking to implement some of these ideas here at CSUSM.
It is time to make calculus more empowering for students. What a joy to bring this to life with @alan_garfinkel ! edsurge.com/news/2023-09-0… It is time you heard about this math revolution. #iteachmath
At #2023WCSDB? Say hi to Gunalan Natesan and Ryan Johnson presenting posters tonight! Gunalan studies the structure of cell lineages in collaboration with @EricJDeeds and Ryan studies developmental heterogeneity in wild isolates of C. elegans in collaboration with @ecandersen!
For those who want to know more about what Cormac McCarthy was like, here's some short remembrances about him from those very close to him at SFI, including me. santafe.edu/news-center/ne…
“Mr. McCarthy moved to *El Paso, N.M.*”🧐 I point this out only because Cormac himself would find it amusing. One of the funniest, most curious, warmest, and brightest people I’ve ever had the pleasure to know. I’ll miss him dearly: nytimes.com/2023/06/13/boo…
Glad our paper is finally out. Thanks to the BrooksGroup gang! Look for the pyCHARMM MSLD workshop coming in late July. pyCHARMM: Embedding CHARMM Functionality in a Python Framework | Journal of Chemical Theory and Computation pubs.acs.org/doi/10.1021/ac…
#MPI2023 Day 3: Another day of fantastic talks on GPCR domains, TF binding sites @ZhipingWeng,cryo-EM maps @d_kihara,mitigation strategies @djosephmc,proteasome self-assembly @EricJDeeds,Kinetics of interactions @yinglongmiao,binding affinity @structbioinf, SARS-CoV-2,#DOCKGROUND
#MPI2023 Day2: We had wonderful talks on docking-based simulation of cell-size proteins by @vakser2, protein-nucleic acid binding by @RemoRohs, CryoEM of chaperonin and substrate by @WahChiu1, a fascinating talk on Protein supersaturation by @HalfmannLab and other excellent talks
@EricJDeeds Kids are asleep, so let’s dig in! Molecular and imaging techniques for lineage tracing get better every day, but whoa you get a lot of data! How do you squeeze piles of trees and measurements into a nugget of biological insight? We came up with some ideas! 1/
It's up! This is an awesome collab with the one and only @EricJDeeds and led by MS student Gunalan Natesan. We describe a new metric for comparing measurements aligned to cell lineages and use it to learn a bunch of new things about cell cycles in the lineage. Tweetorial to come!
Novel metrics reveal new structure and unappreciated heterogeneity in C. elegans development biorxiv.org/cgi/content/sh… #bioRxiv
Novel metrics reveal new structure and unappreciated heterogeneity in C. elegans development biorxiv.org/cgi/content/sh… #bioRxiv
🏆 Most downloaded article 📰 in the #BullMathBiol @SpringerMath in February 2023: Teaching Dynamics to Biology Undergraduates: the UCLA Experience, by Alan Garfinkel, Steve Bennoun, Eric Deeds, Blaire Valkenburgh Congratulations to the authors. @Edu4Smb link.springer.com/article/10.100…
Using experimental evolution to study human disease: @ryan_vignogna led this collaborative effort with @eperlste, Richard Steet, and Pina Andreotti. doi.org/10.7554/eLife.…
The Department of Molecular Biosciences is hiring, not 1, not 2, but 5 positions this year. We want you to be our colleague! Please share widely! Below are links to the job and information on the chair in case you have questions (also can contact me)
Top 10 most downloaded article in the #BullMathBiol, May 2022: Teaching Dynamics to Biology Undergraduates: the UCLA Experience by Garfinkel @alan_garfinkel, Bennoun, Deeds @EricJDeeds & Van Valkenburgh Congrats to the authors! 👏👏👏 🌎 link.springer.com/article/10.100…
@theosysbio @dagarfield @benoitbruneau @AMartinezArias @AntoineZalc @MadS100tist That is true--Twitter is hardly a platform for nuance or depth. Happy to set up a time to chat. I will email you!
@NimwegenLab @ShahLabUCLA @jisaacmurray @MadS100tist Challenge accepted! We simply were not aware of the Sanity package when we were performing our analyses. All popular approaches that people use to deal with "noise" (e.g. PCA) failed, but Sanity seems quite promising. We will read your work with great interest and try it!
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